Molecular Evolution and Patterns of Duplication in the SEP/AGL6-Like Lineage of the Zingiberales: A Proposed Mechanism for Floral Diversification

Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways

(2013) I. Khanday et al.   PLANT PHYSIOLOGY

Tracking the development of the petaloid fertile stamen in Canna indica: insights into the origin of androecial petaloidy in the Zingiberales

(2013) A. M. R. Almeida et al.   AoB Plants

Homoplasy, Pollination, and Emerging Complexity During the Evolution of Floral Development in the Tropical Gingers (Zingiberales)

(2012) Chelsea D. Specht et al.   BOTANICAL REVIEW

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Changes in expression pattern of the teosinte branched1- like genes in the Zingiberales provide a mechanism for evolutionary shifts in symmetry across the order

(2011) Madelaine E. Bartlett et al.   AMERICAN JOURNAL OF BOTANY

Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate

(2011) H. Li et al.   PLANT CELL

Evolution in African Marantaceae - Evidence from Phylogenetic, Ecological and Morphological Studies

(2011) Alexandra C. Ley et al.   SYSTEMATIC BOTANY

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification

(2010) Tom Viaene et al.   BMC PLANT BIOLOGY

Evidence for the involvement of GLOBOSA-like gene duplications and expression divergence in the evolution of floral morphology in the Zingiberales

(2010) Madelaine E. Bartlett et al.   NEW PHYTOLOGIST

B-Function Expression in the Flower Center Underlies the Homeotic Phenotype of Lacandonia schismatica (Triuridaceae)

(2010) E. R. Alvarez-Buylla et al.   PLANT CELL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

MADS-box gene expression and implications for developmental origins of the grass spikelet

(2009) Jill C. Preston et al.   AMERICAN JOURNAL OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Evolution of Plant MADS Box Transcription Factors: Evidence for Shifts in Selection Associated with Early Angiosperm Diversification and Concerted Gene Duplications

(2009) H. Shan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Four Orchid (Oncidium Gower Ramsey) AP1/AGL9-like MADS Box Genes Show Novel Expression Patterns and Cause Different Effects on Floral Transition and Formation in Arabidopsis thaliana

(2009) Yu-Yun Chang et al.   PLANT AND CELL PHYSIOLOGY

PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice

(2009) Kaoru Kobayashi et al.   PLANT AND CELL PHYSIOLOGY

Evolution of AGL6-like MADS Box Genes in Grasses (Poaceae): Ovule Expression Is Ancient and Palea Expression Is New

(2009) R. Reinheimer et al.   PLANT CELL

Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)

(2009) Rongfeng Cui et al.   PLANT JOURNAL

Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower

(2009) Kerstin Kaufmann et al.   PLOS BIOLOGY

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

(2009) Richard GH Immink et al.   GENOME BIOLOGY

Epi-illumination microscopy coupled to in situ hybridization and its utility in the study of evolution and development in non-model species

(2008) Madelaine E. Bartlett et al.   DEVELOPMENT GENES AND EVOLUTION

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

(2008) M. Freeling et al.   GENOME RESEARCH

Floral Synorganization and Secondary Pollen Presentation in Four Marantaceae from Costa Rica

(2008) Regine Classen‐Bockhoff et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

MADS about the evolution of orchid flowers

(2008) Mariana Mondragón-Palomino et al.   TRENDS IN PLANT SCIENCE