From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ

Phylogenetic evidence of the transfer of nodZ and nolL genes from Bradyrhizobium to other rhizobia

(2013) Ernesto Ormeño-Orrillo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diverse Mesorhizobium spp. with unique nodA nodulating the South African legume species of the genus Lessertia

(2012) Macarena Gerding et al.   PLANT AND SOIL

A selective force favoring increased G+C content in bacterial genes

(2012) R. Raghavan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of rhizobia nodulating soybean suggests extensive recruitment of lineage-specific genes in adaptations

(2012) C. F. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: investigating the origin and diversity of Burkholderia phymatum and other beta-rhizobia

(2011) Ravi P.N. Mishra et al.   FEMS MICROBIOLOGY ECOLOGY

Evidence for Horizontal Gene Transfer from Bacteroidetes Bacteria to Dinoflagellate Minicircles

(2011) Krzysztof Moszczyński et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Legume-Nodulating Betaproteobacteria: Diversity, Host Range, and Future Prospects

(2011) Prasad Gyaneshwar et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Towards more robust methods of alien gene detection

(2011) Rajeev K. Azad et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Symbiovars in rhizobia reflect bacterial adaptation to legumes

(2011) Marco A. Rogel et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Evaluating Fossil Calibrations for Dating Phylogenies in Light of Rates of Molecular Evolution: A Comparison of Three Approaches

(2011) Vimoksalehi Lukoschek et al.   SYSTEMATIC BIOLOGY

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

Analysis of intra-genomic GC content homogeneity within prokaryotes

(2010) Jon Bohlin et al.   BMC GENOMICS

Inferring the Evolutionary History of Mo-Dependent Nitrogen Fixation from Phylogenetic Studies of nifK and nifDK

(2010) Linda S. Hartmann et al.   JOURNAL OF MOLECULAR EVOLUTION

Polyploidy Did Not Predate the Evolution of Nodulation in All Legumes

(2010) Steven B. Cannon et al.   PLoS One

Genotypic and phenotypic diversity of rhizobia isolated from Lathyrus japonicus indigenous to Japan

(2010) Seishiro Aoki et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Common and not so common symbiotic entry

(2010) Mark Held et al.   TRENDS IN PLANT SCIENCE

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

Base composition, selection, and phylogenetic significance of indels in the recombination activating gene-1 in vertebrates

(2009) Ylenia Chiari et al.   Frontiers in Zoology

Associations Among Rhizobial Chromosomal Background, nod Genes, and Host Plants Based on the Analysis of Symbiosis of Indigenous Rhizobia and Wild Legumes Native to Xinjiang

(2009) Tian Xu Han et al.   MICROBIAL ECOLOGY

Accelerated Mutation Accumulation in Asexual Lineages of a Freshwater Snail

(2009) M. Neiman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Burkholderiaspecies are ancient symbionts of legumes

(2009) CYRIL BONTEMPS et al.   MOLECULAR ECOLOGY

Insights into the history of the legume-betaproteobacterial symbiosis

(2009) ANNETTE A. ANGUS et al.   MOLECULAR ECOLOGY

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

(2009) Bojian Zhong et al.   PLoS One

Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

(2009) Nathan C. Sheffield et al.   SYSTEMATIC BIOLOGY

SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis

(2008) Martin Kostka et al.   BMC BIOINFORMATICS

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

(2008) Guislaine Refrégier et al.   BMC EVOLUTIONARY BIOLOGY

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

(2008) Julien Dutheil et al.   BMC EVOLUTIONARY BIOLOGY

Different Mesorhizobium species associated with Caragana carry similar symbiotic genes and have common host ranges

(2008) Wen Feng Chen et al.   FEMS MICROBIOLOGY LETTERS

Genome sequence of the  -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

(2008) C. Amadou et al.   GENOME RESEARCH

Structure, Function, and Evolution of Bacterial ATP-Binding Cassette Systems

(2008) A. L. Davidson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land

(2008) F. U. Battistuzzi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cowpea and peanut in southern Africa are nodulated by diverse Bradyrhizobium strains harboring nodulation genes that belong to the large pantropical clade common in Africa

(2008) Emma T. Steenkamp et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Novel strains of nodulating Burkholderia have a role in nitrogen fixation with papilionoid herbaceous legumes adapted to acid, infertile soils

(2008) Giovanni Garau et al.   SOIL BIOLOGY & BIOCHEMISTRY