Statistical Guidelines for Detecting Past Population Shifts Using Ancient DNA

True single-molecule DNA sequencing of a pleistocene horse bone

(2011) L. Orlando et al.   GENOME RESEARCH

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

(2011) M. Rasmussen et al.   SCIENCE

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene

(2010) PAULA F. CAMPOS et al.   MOLECULAR ECOLOGY

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

Influence of Climate Warming on Arctic Mammals? New Insights from Ancient DNA Studies of the Collared Lemming Dicrostonyx torquatus

(2010) Stefan Prost et al.   PLoS One

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

(2010) P. F. Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal genetic change in the last remaining population of woolly mammoth

(2010) V. Nystrom et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

(2010) H. A. Burbano et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

COMPASS: a program for generating serial samples under an infinite sites model

(2009) M. Jakobsson   BIOINFORMATICS

Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA

(2009) M. Stiller et al.   GENOME RESEARCH

Comparing Evolutionary Patterns and Variability in the Mitochondrial Control Region and Cytochrome b in Three Species of Baleen Whales

(2009) S. Elizabeth Alter et al.   JOURNAL OF MOLECULAR EVOLUTION

Ancient mitogenomics

(2009) Simon Y.W. Ho et al.   MITOCHONDRION

Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti)

(2009) J. A. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography of lions (Panthera leossp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

(2009) ROSS BARNETT et al.   MOLECULAR ECOLOGY

First DNA sequences from Asian cave bear fossils reveal deep divergences and complex phylogeographic patterns

(2009) MICHAEL KNAPP et al.   MOLECULAR ECOLOGY

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

A Bayesian Evaluation of Human Mitochondrial Substitution Rates

(2008) Phillip Endicott et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths

(2008) Regis Debruyne et al.   CURRENT BIOLOGY

How accurate is the current picture of human genetic variation?

(2008) I G Romero et al.   HEREDITY

Genetic markers: How accurate can genetic data be?

(2008) L Chikhi   HEREDITY

Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes

(2008) ARMANDO GERALDES et al.   MOLECULAR ECOLOGY

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos)

(2008) Cristina E. Valdiosera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

(2008) M. T. P. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Can one learn history from the allelic spectrum?

(2008) Simon Myers et al.   THEORETICAL POPULATION BIOLOGY