A Stochastic Evolutionary Model for Protein Structure Alignment and Phylogeny

The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

(2010) Zheng Zhang et al.   PLoS One

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons

(2009) N. Rodrigue et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary trees and the Ising model on the Bethe lattice: a proof of Steel’s conjecture

(2009) Constantinos Daskalakis et al.   PROBABILITY THEORY AND RELATED FIELDS

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

(2007) G. Lunter et al.   GENOME RESEARCH