Replacing and Additive Horizontal Gene Transfer in Streptococcus

Unified modeling of gene duplication, loss, and coalescence using a locus tree

(2012) M. D. Rasmussen et al.   GENOME RESEARCH

Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS)

(2011) Yumi Shimomura et al.   BMC GENOMICS

Models, algorithms and programs for phylogeny reconciliation

(2011) J.-P. Doyon et al.   BRIEFINGS IN BIOINFORMATICS

Lateral gene transfer

(2011) Olga Zhaxybayeva et al.   CURRENT BIOLOGY

Comparative Genomic Analysis of the Streptococcus dysgalactiae Species Group: Gene Content, Molecular Adaptation, and Promoter Evolution

(2011) Haruo Suzuki et al.   Genome Biology and Evolution

An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework

(2011) J.-P Doyon et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Delineation of Streptococcus dysgalactiae, Its Subspecies, and Its Clinical and Phylogenetic Relationship to Streptococcus pyogenes

(2011) Anders Jensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A parameter-adaptive dynamic programming approach for inferring cophylogenies

(2010) Daniel Merkle et al.   BMC BIOINFORMATICS

Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences

(2010) X. Didelot et al.   GENETICS

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Population Genetics of Streptococcus dysgalactiae Subspecies equisimilis Reveals Widely Dispersed Clones and Extensive Recombination

(2010) David J. McMillan et al.   PLoS One

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

(2009) M. Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Human Infections Due toStreptococcus dysgalactiaeSubspeciesequisimilis

(2009) Claudia M. Brandt et al.   CLINICAL INFECTIOUS DISEASES

Directional Gene Movement from Human-Pathogenic to Commensal-Like Streptococci

(2009) A. Kalia et al.   INFECTION AND IMMUNITY

Genetic Relationships Deduced from emm and Multilocus Sequence Typing of Invasive Streptococcus dysgalactiae subsp. equisimilis and S. canis Recovered from Isolates Collected in the United States

(2009) Y. Ahmad et al.   JOURNAL OF CLINICAL MICROBIOLOGY

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens

(2009) Matthew T. G. Holden et al.   PLoS Pathogens