Phylogenetic Analyses Uncover a Novel Clade of Transferrin in Nonmammalian Vertebrates

Molecular evolution of the transferrin family and associated receptors

(2011) Lisa A. Lambert   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci

(2011) Øivind Andersen et al.   BMC GENETICS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Positive selection drives lactoferrin evolution in mammals

(2010) Guo Ming Liang et al.   GENETICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

(2010) Shaolin Wang et al.   GENOME BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax

(2009) Elena Sarropoulou et al.   BMC GENOMICS

Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus

(2009) Hong Liu et al.   FISH & SHELLFISH IMMUNOLOGY

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Age at first reproduction explains rate variation in the strepsirrhine molecular clock

(2009) C. Tsantes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

(2008) Amarendran R Subramanian et al.   Algorithms for Molecular Biology

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Evaluation of non-specific immune components from the skin mucus of olive flounder (Paralichthys olivaceus)

(2008) K.J. Palaksha et al.   FISH & SHELLFISH IMMUNOLOGY

Identification and analysis of a prepro-chicken gonadotropin releasing hormone II (preprocGnRH-II) precursor in the Asian seabass, Lates calcarifer, based on an EST-based assessment of its brain transcriptome

(2008) Sik-Loo Tan et al.   GENE

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

(2008) Timo Lassmann et al.   NUCLEIC ACIDS RESEARCH

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE

Large-scale assignment of orthology: back to phylogenetics?

(2008) Toni Gabaldón   GENOME BIOLOGY

Intraperitoneal vaccination of Atlantic cod, Gadus morhua with heat-killed Listonella anguillarum enhances serum antibacterial activity and expression of immune response genes

(2007) Christopher Marlowe A. Caipang et al.   FISH & SHELLFISH IMMUNOLOGY

Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri

(2007) Eric Peatman et al.   MOLECULAR IMMUNOLOGY