Slow Fitness Recovery in a Codon-Modified Viral Genome

Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses

(2011) Tong Zhou et al.   BMC EVOLUTIONARY BIOLOGY

Reduced mRNA Secondary-Structure Stability Near the Start Codon Indicates Functional Genes in Prokaryotes

(2011) Thomas E. Keller et al.   Genome Biology and Evolution

The Phenotype-Fitness Map in Experimental Evolution of Phages

(2011) James J. Bull et al.   PLoS One

Live attenuated influenza virus vaccines by computer-aided rational design

(2010) Steffen Mueller et al.   NATURE BIOTECHNOLOGY

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

(2010) Wanjun Gu et al.   PLoS Computational Biology

Compensatory evolution for a gene deletion is not limited to its immediate functional network

(2009) WR Harcombe et al.   BMC EVOLUTIONARY BIOLOGY

Genetic Inactivation of Poliovirus Infectivity by Increasing the Frequencies of CpG and UpA Dinucleotides within and across Synonymous Capsid Region Codons

(2009) C. C. Burns et al.   JOURNAL OF VIROLOGY

Translationally Optimal Codons Associate with Structurally Sensitive Sites in Proteins

(2009) T. Zhou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Predicting evolution from genomics: experimental evolution of bacteriophage T7

(2008) J J Bull et al.   HEREDITY

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

(2008) J. R. Coleman et al.   SCIENCE