Evolution of the Tbx6/16 Subfamily Genes in Vertebrates: Insights from Zebrafish

Positional orthology: putting genomic evolutionary relationships into context

(2011) C. N. Dewey   BRIEFINGS IN BIOINFORMATICS

Computational methods for Gene Orthology inference

(2011) D. M. Kristensen et al.   BRIEFINGS IN BIOINFORMATICS

The G protein coupled receptor Gpr153 shares common evolutionary origin with Gpr162 and is highly expressed in central regions including the thalamus, cerebellum and the arcuate nucleus

(2011) Smitha Sreedharan et al.   FEBS Journal

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome

(2011) I. Braasch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes

(2010) M. Muffato et al.   BIOINFORMATICS

Orthology confers intron position conservation

(2010) Anna Henricson et al.   BMC GENOMICS

A divergent Tbx6-related gene and Tbx6 are both required for neural crest and intermediate mesoderm development in Xenopus

(2010) Elizabeth M. Callery et al.   DEVELOPMENTAL BIOLOGY

Amphioxus Tbx6/16 and Tbx20 embryonic expression patterns reveal ancestral functions in chordates

(2010) Mohamed R. Belgacem et al.   GENE EXPRESSION PATTERNS

Expansion of Voltage-dependent Na+ Channel Gene Family in Early Tetrapods Coincided with the Emergence of Terrestriality and Increased Brain Complexity

(2010) Harold H. Zakon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ohnologs in the human genome are dosage balanced and frequently associated with disease

(2010) T. Makino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Western Clawed Frog Xenopus tropicalis

(2010) U. Hellsten et al.   SCIENCE

Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family

(2009) William Q Gillis et al.   BMC EVOLUTIONARY BIOLOGY

Identification of mammalian orthologs using local synteny

(2009) Jin Jun et al.   BMC GENOMICS

Retroelements and their impact on genome evolution and functioning

(2009) Elena Gogvadze et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Identification of direct T-box target genes in the developing zebrafish mesoderm

(2009) A. T. Garnett et al.   DEVELOPMENT

Germ layer patterning in bichir and lamprey; an insight into its evolution in vertebrates

(2009) Masaki Takeuchi et al.   DEVELOPMENTAL BIOLOGY

Expression of the oscillating geneher1is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock

(2009) Tim Brend et al.   DEVELOPMENTAL DYNAMICS

Alternative splicing, phylogenetic analysis, and craniofacial expression of zebrafishtbx22

(2009) P. A. Jezewski et al.   DEVELOPMENTAL DYNAMICS

Identification and characterization of the transcription factors involved in T-cell development, t-bet, stat6 and foxp3, within the zebrafish, Danio rerio

(2009) Suman Mitra et al.   FEBS Journal

Identification and characterisation of the developmental expression pattern of tbx5b, a novel tbx5 gene in zebrafish

(2009) Ricard Albalat et al.   GENE EXPRESSION PATTERNS

Automated identification of conserved synteny after whole-genome duplication

(2009) J. M. Catchen et al.   GENOME RESEARCH

Evolution of developmental regulation in the vertebrate FgfD subfamily

(2009) Richard Jovelin et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

(2009)   JOURNAL OF HEREDITY

The Endothelin System: Evolution of Vertebrate-Specific Ligand-Receptor Interactions by Three Rounds of Genome Duplication

(2009) I. Braasch et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Teasing out T-box targets in early mesoderm

(2008) Fiona C Wardle et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2

(2008) Y. Yasuhiko et al.   DEVELOPMENT

Regulation of Canonical Wnt Signaling by Brachyury Is Essential for Posterior Mesoderm Formation

(2008) Benjamin L. Martin et al.   DEVELOPMENTAL CELL

pMesogenin1and2function directly downstream ofXtbx6inXenopussomitogenesis and myogenesis

(2008) Shunsuke Tazumi et al.   DEVELOPMENTAL DYNAMICS

Characterization of TBX20 in human hearts and its regulation by TFAP2

(2008) Stefanie Hammer et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Gene Expansion and Retention Leads to a Diverse Tyrosine Kinase Superfamily in Amphioxus

(2008) S. D'Aniello et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Spliceosomal introns as tools for genomic and evolutionary analysis

(2008) M. Irimia et al.   NUCLEIC ACIDS RESEARCH

Tbx6 Regulates Left/Right Patterning in Mouse Embryos through Effects on Nodal Cilia and Perinodal Signaling

(2008) Anna-Katerina Hadjantonakis et al.   PLoS One

Identification of reptilian genes encoding hair keratin-like proteins suggests a new scenario for the evolutionary origin of hair

(2008) L. Eckhart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The quest for orthologs: finding the corresponding gene across genomes

(2008) Arnold Kuzniar et al.   TRENDS IN GENETICS

Tbx6, Thylacine1, and E47 synergistically activate bowline expression in Xenopus somitogenesis

(2007) Keisuke Hitachi et al.   DEVELOPMENTAL BIOLOGY