Accession-Specific Haplotypes of the Internal Transcribed Spacer Region in Arabidopsis thaliana--A Means for Barcoding Populations

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

TURNIP: tracking unresolved nucleotide polymorphisms in large hard-to-assemble regions of repetitive DNA sequence

(2010) R. P. Davey et al.   BIOINFORMATICS

Plant respiration in a changing world

(2010) Owen Atkin et al.   NEW PHYTOLOGIST

Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals

(2010) Hui Yao et al.   PLoS One

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing

(2009) S. A. James et al.   GENOME RESEARCH

High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes

(2009) Long-Qian Xiao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes

(2009) Piotr A. Ziolkowski et al.   NUCLEIC ACIDS RESEARCH

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Non-coding nuclear DNA markers in phylogenetic reconstruction

(2008) Miriam Calonje et al.   PLANT SYSTEMATICS AND EVOLUTION