The Evolution of the Phage Shock Protein Response System: Interplay between Protein Function, Genomic Organization, and System Function

Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in Escherichia coli

(2010) G. Jovanovic et al.   MICROBIOLOGY-SGM

Model-based evolutionary analysis: the natural history of phage-shock stress response

(2009) Maxime Huvet et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

From evidence to inference: Probing the evolution of protein interaction networks

(2009) Oliver Ratmann et al.   HFSP Journal

A Lower-Order Oligomer Form of Phage Shock Protein A (PspA) Stably Associates with the Hexameric AAA+ Transcription Activator Protein PspF for Negative Regulation

(2009) Nicolas Joly et al.   JOURNAL OF MOLECULAR BIOLOGY

Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes

(2009) Mohan Babu et al.   Molecular BioSystems

Predicting protein–protein interactions in the context of protein evolution

(2009) Anna C. F. Lewis et al.   Molecular BioSystems

Analysis of theYersinia enterocoliticaPspBC proteins defines functional domains, essential amino acids and new roles within the phage-shock-protein response

(2009) Erwan Gueguen et al.   MOLECULAR MICROBIOLOGY

In vivolocalizations of membrane stress controllers PspA and PspG inEscherichia coli

(2009) Christoph Engl et al.   MOLECULAR MICROBIOLOGY

Physical, functional and conditional interactions between ArcAB and phage shock proteins upon secretin-induced stress inEscherichia coli

(2009) Goran Jovanovic et al.   MOLECULAR MICROBIOLOGY

Genotypic sex determination enabled adaptive radiations of extinct marine reptiles

(2009) Chris L. Organ et al.   NATURE

Origin and evolution of operons and metabolic pathways

(2009) Marco Fondi et al.   RESEARCH IN MICROBIOLOGY

Simpson's Paradox in a Synthetic Microbial System

(2009) J. S. Chuang et al.   SCIENCE

Understanding Modularity in Molecular Networks Requires Dynamics

(2009) R. P. Alexander et al.   Science Signaling

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate

(2009) Yu Xia et al.   PLoS Computational Biology

Predicting protein linkages in bacteria: Which method is best depends on task

(2008) Anis Karimpour-Fard et al.   BMC BIOINFORMATICS

The relative value of operon predictions

(2008) R. W. W. Brouwer et al.   BRIEFINGS IN BIOINFORMATICS

Modus operandi of the bacterial RNA polymerase containing the σ54promoter-specificity factor

(2008) Sivaramesh Wigneshweraraj et al.   MOLECULAR MICROBIOLOGY

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

OperonDB: a comprehensive database of predicted operons in microbial genomes

(2008) M. Pertea et al.   NUCLEIC ACIDS RESEARCH