Functionally Compensating Coevolving Positions Are Neither Homoplasic Nor Conserved in Clades

Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information

(2009) C. M. Buslje et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Chaperonin overexpression promotes genetic variation and enzyme evolution

(2009) Nobuhiko Tokuriki et al.   NATURE

An epistatic ratchet constrains the direction of glucocorticoid receptor evolution

(2009) Jamie T. Bridgham et al.   NATURE

Compensatory mutations are repeatable and clustered within proteins

(2009) B. H. Davis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Communication between the Nucleotide Site and the Main Molecular Hinge of 3-Phosphoglycerate Kinase†

(2008) Judit Szabó et al.   BIOCHEMISTRY

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics

(2008) J Gregory Caporaso et al.   BMC EVOLUTIONARY BIOLOGY

Protein co-evolution, co-adaptation and interactions

(2008) Florencio Pazos et al.   EMBO JOURNAL

Frequent and Widespread Parallel Evolution of Protein Sequences

(2008) A. Rokas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase

(2008) C. Gondeau et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH