Investigating Protein-Coding Sequence Evolution with Probabilistic Codon Substitution Models

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

(2008) R. A. Studer et al.   GENOME RESEARCH

Reconstruction of ancestral FGLamide-type insect allatostatins: A novel approach to the study of allatostatin function and evolution

(2008) Ekaterina F. Hult et al.   JOURNAL OF INSECT PHYSIOLOGY

A Site- and Time-Heterogeneous Model of Amino Acid Replacement

(2008) Samuel Blanquart et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simulating DNA Coding Sequence Evolution with EvolveAGene 3

(2008) B. G. Hall   MOLECULAR BIOLOGY AND EVOLUTION

Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage

(2008) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating selection pressures on HIV-1 using phylogenetic likelihood models

(2008) S. L. Kosakovsky Pond et al.   STATISTICS IN MEDICINE

Synonymous Substitutions Substantially Improve Evolutionary Inference from Highly Diverged Proteins

(2008) Tae-Kun Seo et al.   SYSTEMATIC BIOLOGY

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics

Disease progression and evolution of the HIV-1 env gene in 24 infected infants

(2007) Antonio Carvajal-Rodríguez et al.   INFECTION GENETICS AND EVOLUTION