Comprehensive Quantitative Comparison of the Membrane Proteome, Phosphoproteome, and Sialiome of Human Embryonic and Neural Stem Cells

Use of Stable Isotope Dimethyl Labeling Coupled to Selected Reaction Monitoring to Enhance Throughput by Multiplexing Relative Quantitation of Targeted Proteins

(2012) Thin Thin Aye et al.   ANALYTICAL CHEMISTRY

Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses

(2012) Giuseppe Palmisano et al.   JOURNAL OF PROTEOME RESEARCH

Site-specific phosphorylation of protein phosphatase 1 regulatory subunit 12A stimulated or suppressed by insulin

(2012) Alex Chao et al.   Journal of Proteomics

A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development

(2012) Giuseppe Palmisano et al.   MOLECULAR & CELLULAR PROTEOMICS

Proliferative Neural Stem Cells Have High Endogenous ROS Levels that Regulate Self-Renewal and Neurogenesis in a PI3K/Akt-Dependant Manner

(2011) Janel E. Le Belle et al.   Cell Stem Cell

Multidimensional Strategy for Sensitive Phosphoproteomics Incorporating Protein Prefractionation Combined with SIMAC, HILIC, and TiO2Chromatography Applied to Proximal EGF Signaling

(2011) Kasper Engholm-Keller et al.   JOURNAL OF PROTEOME RESEARCH

Universal and Confident Phosphorylation Site Localization Using phosphoRS

(2011) Thomas Taus et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells

(2011) Raghothama Chaerkady et al.   PROTEOMICS

System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation

(2011) K. T. G. Rigbolt et al.   Science Signaling

Transmembrane Signaling Proteoglycans

(2010) John R. Couchman   Annual Review of Cell and Developmental Biology

Proteomic identification of differentially expressed genes in neural stem cells and neurons differentiated from embryonic stem cells of cynomolgus monkey (Macaca fascicularis) in vitro

(2010) Kuniko Akama et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Structural properties of the glycoplasmanylinositol anchor phospholipid of the complement membrane attack complex inhibitor CD59

(2010) W. D. RATNOFF et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Selective enrichment of sialic acid–containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry

(2010) Giuseppe Palmisano et al.   Nature Protocols

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Efficient Generation of Functional Dopaminergic Neurons from Human Induced Pluripotent Stem Cells Under Defined Conditions

(2010) Andrzej Swistowski et al.   STEM CELLS

The Apical Polarity Determinant Crumbs 2 Is a Novel Regulator of ESC-Derived Neural Progenitors

(2010) Thorsten Boroviak et al.   STEM CELLS

Brain development needs sugar: the role of polysialic acid in controlling NCAM functions

(2009) Martina Mühlenhoff et al.   BIOLOGICAL CHEMISTRY

Phosphorylation Dynamics during Early Differentiation of Human Embryonic Stem Cells

(2009) Dennis Van Hoof et al.   Cell Stem Cell

Phosphoproteomic Analysis of Human Embryonic Stem Cells

(2009) Laurence M. Brill et al.   Cell Stem Cell

Temporal Analysis of Neural Differentiation Using Quantitative Proteomics†

(2009) Raghothama Chaerkady et al.   JOURNAL OF PROTEOME RESEARCH

Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets

(2009) Marina Spivak et al.   JOURNAL OF PROTEOME RESEARCH

Functional Proteomics Identifies Targets of Phosphorylation by B-Raf Signaling in Melanoma

(2009) William M. Old et al.   MOLECULAR CELL

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

(2009) Paul J Boersema et al.   Nature Protocols

Erk1/2 promotes proliferation and inhibits neuronal differentiation of neural stem cells

(2009) Bin Wang et al.   NEUROSCIENCE LETTERS

Xeno-Free Defined Conditions for Culture of Human Embryonic Stem Cells, Neural Stem Cells and Dopaminergic Neurons Derived from Them

(2009) Andrzej Swistowski et al.   PLoS One

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

(2009) D. L. Swaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative proteome and transcriptome analyses of embryonic stem cells during embryoid body-based differentiation

(2009) Ali Fathi et al.   PROTEOMICS

Stage-Specific Role for Shh in Dopaminergic Differentiation of Human Embryonic Stem Cells Induced by Stromal Cells

(2009) Anna Maria Swistowska et al.   STEM CELLS AND DEVELOPMENT

Laminin enhances the growth of human neural stem cells in defined culture media

(2008) Peter E Hall et al.   BMC NEUROSCIENCE

Wnt signaling and stem cell control

(2008) Roel Nusse   CELL RESEARCH

TiO2-Based Phosphoproteomic Analysis of the Plasma Membrane and the Effects of Phosphatase Inhibitor Treatment

(2008) Tine E. Thingholm et al.   JOURNAL OF PROTEOME RESEARCH

Hydrophilic Interaction Chromatography Reduces the Complexity of the Phosphoproteome and Improves Global Phosphopeptide Isolation and Detection

(2008) Dean E. McNulty et al.   MOLECULAR & CELLULAR PROTEOMICS

Wnt-mediated self-renewal of neural stem/progenitor cells

(2008) M. Y. S. Kalani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell surface biomarkers of embryonic stem cells

(2008) Kohji Nagano et al.   PROTEOMICS