The SILAC Fly Allows for Accurate Protein Quantificationin Vivo

Advanced Identification of Proteins in Uncharacterized Proteomes by Pulsedin VivoStable Isotope Labeling-based Mass Spectrometry

(2010) Mario Looso et al.   MOLECULAR & CELLULAR PROTEOMICS

Cell death duringDrosophila melanogasterearly oogenesis is mediated through autophagy

(2009) Ioannis P. Nezis et al.   Autophagy

Quantitative proteomics: a tool to assess cell differentiation

(2009) Michiel Vermeulen et al.   CURRENT OPINION IN CELL BIOLOGY

Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members

(2009) V. V. Vagin et al.   GENES & DEVELOPMENT

Worms from Venus and Mars: Proteomics Profiling of Sexual Differences inCaenorhabditis elegansUsingin Vivo15N Isotope Labeling

(2009) Bastiaan B. J. Tops et al.   JOURNAL OF PROTEOME RESEARCH

In VivoStable Isotope Labeling of Fruit Flies Reveals Post-transcriptional Regulation in the Maternal-to-zygotic Transition

(2009) Joost W. Gouw et al.   MOLECULAR & CELLULAR PROTEOMICS

Systems-wide Analysis of a Phosphatase Knock-down by Quantitative Proteomics and Phosphoproteomics

(2009) Maximiliane Hilger et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Proteomics by Metabolic Labeling of Model Organisms

(2009) Joost W. Gouw et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

(2009) Jürgen Cox et al.   Nature Protocols

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS

A MS data search method for improved15N-labeled protein identification

(2009) Yaoyang Zhang et al.   PROTEOMICS

Proteome mapping of the Drosophila melanogaster male reproductive system

(2009) Nobuaki Takemori et al.   PROTEOMICS

Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization

(2009) Y. Kirino et al.   RNA

Optimizing Identification and Quantitation of15N-Labeled Proteins in Comparative Proteomics

(2008) Joost W. Gouw et al.   ANALYTICAL CHEMISTRY

SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function

(2008) Marcus Krüger et al.   CELL

A Role for Very-Long-Chain Fatty Acids in Furrow Ingression during Cytokinesis in Drosophila Spermatocytes

(2008) Edith Szafer-Glusman et al.   CURRENT BIOLOGY

Effector caspase Dcp-1 and IAP protein Bruce regulate starvation-induced autophagy duringDrosophila melanogasteroogenesis

(2008) Ying-Chen Claire Hou et al.   JOURNAL OF CELL BIOLOGY

Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events

(2008) Lujian Liao et al.   JOURNAL OF PROTEOME RESEARCH

Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions

(2008) Cuiping Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Combined Use of RNAi and Quantitative Proteomics to Study Gene Function in Drosophila

(2008) Tiziana Bonaldi et al.   MOLECULAR CELL

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Stable isotopic labeling in proteomics

(2008) Kris Gevaert et al.   PROTEOMICS

Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating

(2008) Geoffrey D Findlay et al.   PLOS BIOLOGY