A Novel Approach for Untargeted Post-translational Modification Identification Using Integer Linear Optimization and Tandem Mass Spectrometry

Post-acquisition ETD spectral processing for increased peptide identifications

(2009) David M. Good et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A Mixed Integer Linear Optimization Framework for the Identification and Quantification of Targeted Post-translational Modifications of Highly Modified Proteins Using Multiplexed Electron Transfer Dissociation Tandem Mass Spectrometry

(2009) Peter A. DiMaggio et al.   MOLECULAR & CELLULAR PROTEOMICS

Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications forde NovoPeptide Sequencing and Identification

(2009) Sangtae Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

Chromatin-Specific Remodeling by HMGB1 and Linker Histone H1 Silences Proinflammatory Genes during Endotoxin Tolerance

(2009) M. E. Gazzar et al.   MOLECULAR AND CELLULAR BIOLOGY

PTMap—A sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites

(2009) Yue Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SeMoP: A New Computational Strategy for the Unrestricted Search for Modified Peptides Using LC−MS/MS Data

(2008) Christian Baumgartner et al.   JOURNAL OF PROTEOME RESEARCH

A Hybrid Method for Peptide Identification Using Integer Linear Optimization, Local Database Search, and Quadrupole Time-of-Flight or OrbiTrap Tandem Mass Spectrometry

(2008) Peter A. DiMaggio et al.   JOURNAL OF PROTEOME RESEARCH

Strategy for Comprehensive Identification of Post-translational Modifications in Cellular Proteins, Including Low Abundant Modifications: Application to Glyceraldehyde-3-phosphate Dehydrogenase

(2008) Jawon Seo et al.   JOURNAL OF PROTEOME RESEARCH

Valence Parity Rendersz•-Type Ions Chemically Distinct

(2008) Shane L. Hubler et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types

(2008) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS

Decision tree–driven tandem mass spectrometry for shotgun proteomics

(2008) Danielle L Swaney et al.   NATURE METHODS