Synthetic Peptide Arrays for Pathway-Level Protein Monitoring by Liquid Chromatography-Tandem Mass Spectrometry

Synthesis and Application of Peptide Arrays: Quo Vadis SPOT Technology

(2009) Rudolf Volkmer   CHEMBIOCHEM

Integration of Proteomic-Based Tools for Improved Biomarkers of Myocardial Injury

(2009) R. E. Gerszten et al.   CLINICAL CHEMISTRY

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

(2009) S. E. Abbatiello et al.   CLINICAL CHEMISTRY

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

(2009) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

A Human Proteome Detection and Quantitation Project

(2009) N. Leigh Anderson et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

(2009) Hasmik Keshishian et al.   MOLECULAR & CELLULAR PROTEOMICS

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

(2009) Terri A Addona et al.   NATURE BIOTECHNOLOGY

Interaction of the Deubiquitinating Enzyme Ubp2 and the E3 Ligase Rsp5 Is Required for Transporter/Receptor Sorting in the Multivesicular Body Pathway

(2009) Mandy H. Y. Lam et al.   PLoS One

Predictions of peptides' retention times in reversed-phase liquid chromatography as a new supportive tool to improve protein identification in proteomics

(2009) Tomasz Bączek et al.   PROTEOMICS

Critical Evaluation of Product Ion Selection and Spectral Correlation Analysis for Biomarker Screening Using Targeted Peptide Multiple Reaction Monitoring

(2009) Jian Liu et al.   Clinical Proteomics

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

(2008) Bobbie-Jo M. Webb-Robertson et al.   BIOINFORMATICS

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

(2008) A. A. Klammer et al.   BIOINFORMATICS

Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

(2008) Xi Chen et al.   CELL

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

“Product Ion Monitoring” Assay for Prostate-Specific Antigen in Serum Using a Linear Ion-Trap

(2008) Vathany Kulasingam et al.   JOURNAL OF PROTEOME RESEARCH

Evaluation of Data-Dependent versus Targeted Shotgun Proteomic Approaches for Monitoring Transcription Factor Expression in Breast Cancer

(2008) Charanjit Sandhu et al.   JOURNAL OF PROTEOME RESEARCH

High Quality Catalog of Proteotypic Peptides from Human Heart

(2008) Kelli G. Kline et al.   JOURNAL OF PROTEOME RESEARCH

Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring

(2008) Geraldine M. Walsh et al.   Journal of Proteomics

An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

(2008) Alexander Schmidt et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Quantitative Analysis ofStreptococcus pyogenesVirulence Factors by Multiple Reaction Monitoring

(2008) Vinzenz Lange et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Inclusion Mass Screening

(2008) Jacob D. Jaffe et al.   MOLECULAR & CELLULAR PROTEOMICS

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS