A Quantitative Proteomics Analysis of Subcellular Proteome Localization and Changes Induced by DNA Damage

The vital link between the ubiquitin–proteasome pathway and DNA repair: Impact on cancer therapy

(2009) Akira Motegi et al.   CANCER LETTERS

Bioinformatics analysis of mass spectrometry-based proteomics data sets

(2009) Chanchal Kumar et al.   FEBS LETTERS

The Organelle Proteome of the DT40 Lymphocyte Cell Line

(2009) Stephanie L. Hall et al.   MOLECULAR & CELLULAR PROTEOMICS

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

(2009) Jürgen Cox et al.   Nature Protocols

High confidence determination of specific protein–protein interactions using quantitative mass spectrometry

(2008) Michiel Vermeulen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Complementary methods to assist subcellular fractionation in organellar proteomics

(2008) Daniel J Gauthier et al.   Expert Review of Proteomics

A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements

(2008) G. Mittler et al.   GENOME RESEARCH

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

(2008) Laura Trinkle-Mulcahy et al.   JOURNAL OF CELL BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

NOPdb: Nucleolar Proteome Database--2008 update

(2008) Y. Ahmad et al.   NUCLEIC ACIDS RESEARCH