Land Use Type Significantly Affects Microbial Gene Transcription in Soil

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Biodegradation of mono-hydroxylated PCBs by Burkholderia xenovorans

(2012) Rouzbeh Tehrani et al.   BIOTECHNOLOGY LETTERS

Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil

(2012) Alexandre de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

(2012) Coralie Damon et al.   PLoS One

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Ecology and metagenomics of soil microorganisms

(2011) Petr Baldrian et al.   FEMS MICROBIOLOGY ECOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

CoMet—a web server for comparative functional profiling of metagenomes

(2011) Thomas Lingner et al.   NUCLEIC ACIDS RESEARCH

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

(2011) Frank J Stewart et al.   GENOME BIOLOGY

Accessing the Soil Metagenome for Studies of Microbial Diversity

(2010) Tom O. Delmont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extraction of mRNA from Soil

(2010) C. Mettel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

(2010) Markus Fischer et al.   BASIC AND APPLIED ECOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

The emerging role for bacteria in lignin degradation and bio-product formation

(2010) Timothy DH Bugg et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Aerobic Vanillate Degradation and C1 Compound Metabolism in Bradyrhizobium japonicum

(2009) N. Sudtachat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of ribosomal RNA genes in metagenomic fragments

(2009) Ying Huang et al.   BIOINFORMATICS

Visual and statistical comparison of metagenomes

(2009) Suparna Mitra et al.   BIOINFORMATICS

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences

(2009) Peter Meinicke   BMC GENOMICS

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

The University of Minnesota Biocatalysis/Biodegradation Database: improving public access

(2009) Junfeng Gao et al.   NUCLEIC ACIDS RESEARCH

Orphelia: predicting genes in metagenomic sequencing reads

(2009) Katharina J. Hoff et al.   NUCLEIC ACIDS RESEARCH

Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this

(2009) Francisco J. Ruiz-Dueñas et al.   Microbial Biotechnology

Bacterial Biosynthesis of a Multipotent Stilbene

(2008) Susan A. Joyce et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere

(2008) M. S. Elshahed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptional activity of paddy soil bacterial communities

(2008) Pravin Malla Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation and analysis of mRNA from environmental microbial communities

(2008) Ken C. McGrath et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY