Calciomics: integrative studies of Ca2+-binding proteins and their interactomes in biological systems

Molecular interaction and functional regulation of connexin50 gap junctions by calmodulin

(2011) Yanyi Chen et al.   BIOCHEMICAL JOURNAL

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

(2011) Daniel B Roche et al.   BMC BIOINFORMATICS

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins

(2011) Daniel J. Rigden et al.   PLoS One

Structural and Energetic Determinants of Apo Calmodulin Binding to the IQ Motif of the NaV1.2 Voltage-Dependent Sodium Channel

(2011) Michael D. Feldkamp et al.   STRUCTURE

Molecular Basis of Calcium Signaling in Lymphocytes: STIM and ORAI

(2010) Patrick G. Hogan et al.   Annual Review of Immunology

Site-specific modification of calmodulin Ca2+affinity tunes the skeletal muscle ryanodine receptor activation profile

(2010) Jie Jiang et al.   BIOCHEMICAL JOURNAL

Integration of Diverse Research Methods to Analyze and Engineer Ca2+- Binding Proteins: From Prediction to Production

(2010) Michael Kirberger et al.   Current Bioinformatics

Elucidation of a Novel Extracellular Calcium-binding Site on Metabotropic Glutamate Receptor 1α (mGluR1α) That Controls Receptor Activation

(2010) Yusheng Jiang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Calcium-dependent Association of Calmodulin with the Rubella Virus Nonstructural Protease Domain

(2010) Yubin Zhou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Solution NMR Structure of Apo-Calmodulin in Complex with the IQ Motif of Human Cardiac Sodium Channel NaV1.5

(2010) Benjamin Chagot et al.   JOURNAL OF MOLECULAR BIOLOGY

A protein sequence meta-functional signature for calcium binding residue prediction

(2010) Jeremy A. Horst et al.   PATTERN RECOGNITION LETTERS

Analysis and prediction of calcium-binding pockets from apo-protein structures exhibiting calcium-induced localized conformational changes

(2010) Xue Wang et al.   PROTEIN SCIENCE

FINDSITE-metal: Integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level

(2010) Michal Brylinski et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Identification of calcium-binding proteins associated with the human sperm plasma membrane

(2010) Soren Naaby-Hansen et al.   Reproductive Biology and Endocrinology

Calmodulin Mediates the Ca2+-Dependent Regulation of Cx44 Gap Junctions

(2009) Yubin Zhou et al.   BIOPHYSICAL JOURNAL

Viral calciomics: Interplays between Ca2+ and virus

(2009) Yubin Zhou et al.   CELL CALCIUM

A single EF-hand isolated from STIM1 forms dimer in the absence and presence of Ca2+

(2009) Yun Huang et al.   FEBS Journal

Bioinformatics in bioinorganic chemistry

(2009) Ivano Bertini et al.   Metallomics

STIM1 gates the store-operated calcium channel ORAI1 in vitro

(2009) Yubin Zhou et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MetaPocket: A Meta Approach to Improve Protein Ligand Binding Site Prediction

(2009) Bingding Huang   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Predicting small ligand binding sites in proteins using backbone structure

(2008) Andrew J. Bordner   BIOINFORMATICS

Mechanism of Local and Global Ca2+ Sensing by Calmodulin in Complex with a Ca2+ Channel

(2008) Michael R. Tadross et al.   CELL

Statistical analysis of structural characteristics of protein Ca2+-binding sites

(2008) Michael Kirberger et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

A modular switch for spatial Ca2+ selectivity in the calmodulin regulation of CaV channels

(2008) Ivy E. Dick et al.   NATURE

Towards predicting Ca2+-binding sites with different coordination numbers in proteins with atomic resolution

(2008) Xue Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Ca2+/Calmodulin-binding proteins from the C. elegans proteome

(2007) Xinchun Shen et al.   CELL CALCIUM