Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways

Discovery of new enzymes and metabolic pathways by using structure and genome context

(2013) Suwen Zhao et al.   NATURE

Strategy for Optimizing LC-MS Data Processing in Metabolomics: A Design of Experiments Approach

(2012) Mattias Eliasson et al.   ANALYTICAL CHEMISTRY

1-Methylthio-d-xylulose 5-Phosphate Methylsulfurylase: A Novel Route to 1-Deoxy-d-xylulose 5-Phosphate in Rhodospirillum rubrum

(2012) Benjamin P. Warlick et al.   BIOCHEMISTRY

An accelerated workflow for untargeted metabolomics using the METLIN database

(2012) Ralf Tautenhahn et al.   NATURE BIOTECHNOLOGY

A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis

(2012) Tobias J Erb et al.   Nature Chemical Biology

MetSign: A Computational Platform for High-Resolution Mass Spectrometry-Based Metabolomics

(2011) Xiaoli Wei et al.   ANALYTICAL CHEMISTRY

MPEA—metabolite pathway enrichment analysis

(2011) Matti Kankainen et al.   BIOINFORMATICS

AStream: an R package for annotating LC/MS metabolomic data

(2011) Arnald Alonso et al.   BIOINFORMATICS

MBRole: enrichment analysis of metabolomic data

(2011) M. Chagoyen et al.   BIOINFORMATICS

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets

(2011) M. Brown et al.   BIOINFORMATICS

Metabolomic Profiling Reveals Potential Markers and Bioprocesses Altered in Bladder Cancer Progression

(2011) N. Putluri et al.   CANCER RESEARCH

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomics-Based Discovery of Koranimine, a Cyclic Imine Natural Product

(2011) Bradley S. Evans et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

(2011) Jianguo Xia et al.   Nature Protocols

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Metabolomic Profiling Reveals a Role for Androgen in Activating Amino Acid Metabolism and Methylation in Prostate Cancer Cells

(2011) Nagireddy Putluri et al.   PLoS One

In Helicobacter pylori, LuxS Is a Key Enzyme in Cysteine Provision through a Reverse Transsulfuration Pathway

(2010) N. C. Doherty et al.   JOURNAL OF BACTERIOLOGY

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

(2010) J. Xia et al.   NUCLEIC ACIDS RESEARCH

Interpreting Metabolomic Profiles using Unbiased Pathway Models

(2010) Rahul C. Deo et al.   PLoS Computational Biology

Metabolic characteristics and importance of the universal methionine salvage pathway recycling methionine from 5′-methylthioadenosine

(2009) Eva Albers   IUBMB LIFE

Relative Contributions of Cystathionine β-Synthase and γ-Cystathionase to H2S Biogenesis via Alternative Trans-sulfuration Reactions

(2009) Sangita Singh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry

(2009) Haiying Zhang et al.   JOURNAL OF MASS SPECTROMETRY

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

(2009) Arun Sreekumar et al.   NATURE

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

DECOMP--from interpreting Mass Spectrometry peaks to solving the Money Changing Problem

(2008) S. Bocker et al.   BIOINFORMATICS

Probabilistic assignment of formulas to mass peaks in metabolomics experiments

(2008) Simon Rogers et al.   BIOINFORMATICS

SIRIUS: decomposing isotope patterns for metabolite identification†

(2008) Sebastian Böcker et al.   BIOINFORMATICS

Establishing bacterial communities by 'word of mouth': LuxS and autoinducer 2 in biofilm development

(2008) Kim Rachael Hardie et al.   NATURE REVIEWS MICROBIOLOGY