Human endogenous retroviruses sustain complex and cooperative regulation of gene-containing loci and unannotated megabase-sized regions
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Title
Human endogenous retroviruses sustain complex and cooperative regulation of gene-containing loci and unannotated megabase-sized regions
Authors
Keywords
Endogenous retrovirus and endogenous retrovirus-like repeats (ERVs), Chromatin immunoprecipitation with sequencing (ChIP-seq), Transcription coregulation, Paired-end RNA-sequencing (RNA-seq), LTR12 ERV9 LTR repeat, Alu SINE repeat, Mammalian apparent LTR retrotransposon (MaLR), Chimeric and unannotated transcription
Journal
Retrovirology
Volume 12, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-04-17
DOI
10.1186/s12977-015-0161-9
References
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Note: Only part of the references are listed.- Aluelements: at the crossroads between disease and evolution: Figure 1
- (2015) Jernej Ule BIOCHEMICAL SOCIETY TRANSACTIONS
- Abundance, arrangement, and function of sequence motifs in the chicken promoters
- (2014) Hideaki Abe et al. BMC GENOMICS
- Setdb1is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells
- (2014) Sheng Liu et al. GENES & DEVELOPMENT
- Alternatively spliced transcripts and novel pseudogenes of the Plasmodium falciparum resistance-associated locus pfcrt detected in East African malaria patients
- (2014) N. B. Gadalla et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Endogenous Retroviruses and the Development of Cancer
- (2014) G. Kassiotis JOURNAL OF IMMUNOLOGY
- CCAAT Enhancer Binding Protein and Nuclear Factor of Activated T Cells Regulate HIV-1 LTR via a Novel Conserved Downstream Site in Cells of the Monocyte-Macrophage Lineage
- (2014) Satinder Dahiya et al. PLoS One
- Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
- (2014) F. E. Lock et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Novel principles of gamma-retroviral insertional transcription activation in murine leukemia virus-induced end-stage tumors
- (2014) Martin Sokol et al. Retrovirology
- Implication of Human Endogenous Retrovirus Envelope Proteins in Placental Functions
- (2014) Adjimon Lokossou et al. Viruses-Basel
- Evolution of Alu Elements toward Enhancers
- (2014) Ming Su et al. Cell Reports
- Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
- (2013) Kathi Zarnack et al. CELL
- A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity
- (2013) B. Zhang et al. GENOME RESEARCH
- Epigenetic marking and repression of porcine endogenous retroviruses
- (2013) G. Wolf et al. JOURNAL OF GENERAL VIROLOGY
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Sequence signatures extracted from proximal promoters can be used to predict distal enhancers
- (2013) Leila Taher et al. GENOME BIOLOGY
- Association of Endogenous Retroviruses and Long Terminal Repeats with Human Disorders
- (2013) Iyoko Katoh et al. Frontiers in Oncology
- HERV-K(HML-2), the Best Preserved Family of HERVs: Endogenization, Expression, and Implications in Health and Disease
- (2013) Oliver Hohn et al. Frontiers in Oncology
- CTCF: insights into insulator function during development
- (2012) M. Herold et al. DEVELOPMENT
- Three Murine Leukemia Virus Integration Regions within 100 Kilobases Upstream of c-myb Are Proximal to the 5' Regulatory Region of the Gene through DNA Looping
- (2012) J. Zhang et al. JOURNAL OF VIROLOGY
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Dfam: a database of repetitive DNA based on profile hidden Markov models
- (2012) Travis J. Wheeler et al. NUCLEIC ACIDS RESEARCH
- Promoter cross-talk via a shared enhancer explains paternally biased expression of Nctc1 at the Igf2/H19/Nctc1 imprinted locus
- (2012) Bokkee Eun et al. NUCLEIC ACIDS RESEARCH
- ENCODE Data in the UCSC Genome Browser: year 5 update
- (2012) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Nucleotide composition-linked divergence of vertebrate core promoter architecture
- (2011) S. J. van Heeringen et al. GENOME RESEARCH
- Enhancer function: new insights into the regulation of tissue-specific gene expression
- (2011) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering
- (2011) Duygu Ucar et al. NUCLEIC ACIDS RESEARCH
- Global Mapping of H3K4me1 and H3K4me3 Reveals the Chromatin State-Based Cell Type-Specific Gene Regulation in Human Treg Cells
- (2011) Yi Tian et al. PLoS One
- Endogenous retrovirus drives hitherto unknown proapoptotic p63 isoforms in the male germ line of humans and great apes
- (2011) Ulrike Beyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional consequences of bidirectional promoters
- (2011) Wu Wei et al. TRENDS IN GENETICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- LINE-1 Retrotransposition Activity in Human Genomes
- (2010) Christine R. Beck et al. CELL
- The cell biology of smell
- (2010) Shannon DeMaria et al. JOURNAL OF CELL BIOLOGY
- Antisense Transcription in Gammaretroviruses as a Mechanism of Insertional Activation of Host Genes
- (2010) M. H. Rasmussen et al. JOURNAL OF VIROLOGY
- Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
- (2010) Björn Lamprecht et al. NATURE MEDICINE
- Long-range function of an intergenic retrotransposon
- (2010) W. Pi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Feedback inhibition of L1 and alu retrotransposition through altered double strand break repair kinetics
- (2010) Nicholas A Wallace et al. Mobile DNA
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- The Genetic Signatures of Noncoding RNAs
- (2009) John S. Mattick PLoS Genetics
- Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project
- (2008) Aline Flockerzi et al. BMC GENOMICS
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