How to contend with paraphyly in the taxonomy of the delphinine cetaceans?

Heed the father of cladistics

(2013) Quentin Wheeler et al.   NATURE

A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing

(2013) John E. McCormack et al.   PLoS One

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Species tree of a recent radiation: The subfamily Delphininae (Cetacea, Mammalia)

(2012) Ana R. Amaral et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

(2012) M. dos Reis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-Throughput Identification of Informative Nuclear Loci for Shallow-Scale Phylogenetics and Phylogeography

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Whale phylogeny and rapid radiation events revealed using novel retroposed elements and their flanking sequences

(2011) Zhuo Chen et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae

(2011) Julia T Vilstrup et al.   BMC EVOLUTIONARY BIOLOGY

A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea

(2011) Jonathan H Geisler et al.   BMC EVOLUTIONARY BIOLOGY

Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes

(2011) Alexandre Hassanin et al.   COMPTES RENDUS BIOLOGIES

Multiple lines of evidence for an Australasian geographic boundary in the Indo-Pacific humpback dolphin (Sousa chinensis): population or species divergence?

(2011) C. H. Frère et al.   CONSERVATION GENETICS

Phylogenomic analyses and improved resolution of Cetartiodactyla

(2011) Xuming Zhou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Toward the resolution of an explosive radiation—A multilocus phylogeny of oceanic dolphins (Delphinidae)

(2011) Michael R. McGowen   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A New Dolphin Species, the Burrunan Dolphin Tursiops australis sp. nov., Endemic to Southern Australian Coastal Waters

(2011) Kate Charlton-Robb et al.   PLoS One

Phylogenetic Status and Timescale for the Diversification of Steno and Sotalia Dolphins

(2011) Haydée A. Cunha et al.   PLoS One

Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation

(2011) Sebastián Duchêne et al.   PLoS One

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Phylogenetic analyses in cetacean species of the family Delphinidae using a short wavelength sensitive opsin gene sequence

(2010) Tomoko Koito et al.   FISHERIES SCIENCE

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Diversity versus disparity and the radiation of modern cetaceans

(2010) G. J. Slater et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales

(2009) Ye Xiong et al.   BMC EVOLUTIONARY BIOLOGY

Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae)

(2009) Sarah E Kingston et al.   BMC EVOLUTIONARY BIOLOGY

Divergence date estimation and a comprehensive molecular tree of extant cetaceans

(2009) Michael R. McGowen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

(2009) Mette E. Steeman et al.   SYSTEMATIC BIOLOGY

Genetic analysis of historic western Great Lakes region wolf samples reveals early Canis lupus/lycaon hybridization

(2008) T. Wheeldon et al.   Biology Letters

Multi-gene evidence for a new bottlenose dolphin species in southern Australia

(2008) Luciana M. Möller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The phylogeny of Cetartiodactyla: The importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies

(2008) Ingi Agnarsson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Molecular systematics of South American dolphins Sotalia: Sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae

(2007) Susana Caballero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION