Integrated Metagenomic and Metatranscriptomic Analyses of Microbial Communities in the Meso- and Bathypelagic Realm of North Pacific Ocean

DNA-based molecular fingerprinting of eukaryotic protists and cyanobacteria contributing to sinking particle flux at the Bermuda Atlantic time-series study

(2013) Jessica Amacher et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Disturbance of deep-sea environments induced by the M9.0 Tohoku Earthquake

(2012) Shinsuke Kawagucci et al.   Scientific Reports

Quantification of microbial communities in subsurface marine sediments of the Black Sea and off Namibia

(2012) Axel Schippers   Frontiers in Microbiology

Isolation and characterisation of bacteria from the Eastern Mediterranean deep sea

(2011) Andrea Gärtner et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Microbial Community Composition and Function in Permanently Cold Seawater and Sediments from an Arctic Fjord of Svalbard

(2011) A. Teske et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

(2011) Suparna Mitra et al.   BMC BIOINFORMATICS

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community transcription patterns during a marine phytoplankton bloom

(2011) Johanna M. Rinta-Kanto et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

(2011) Yanmei Shi et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems

(2011) Erwan G. Roussel et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial diversity in deep-sea sediment from the cobalt-rich crust deposit region in the Pacific Ocean

(2011) Li Liao et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Metagenomic Analysis of 0.2-μm-Passable Microorganisms in Deep-Sea Hydrothermal Fluid

(2011) Ryosuke Nakai et al.   MARINE BIOTECHNOLOGY

High Contribution of SAR11 to Microbial Activity in the North West Mediterranean Sea

(2011) Mélissa Laghdass et al.   MICROBIAL ECOLOGY

Phylogenetic and Gene Expression Analysis of Cyanobacteria and Diatoms in the Twilight Waters of the Temperate Northeast Pacific Ocean

(2011) Weimin Gao et al.   MICROBIAL ECOLOGY

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

(2011) J. Viklund et al.   MOLECULAR BIOLOGY AND EVOLUTION

Going Deeper: Metagenome of a Hadopelagic Microbial Community

(2011) Emiley A. Eloe et al.   PLoS One

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria

(2011) Jing Sun et al.   PLoS One

Molecular Diversity of Fungal Phylotypes Co-Amplified Alongside Nematodes from Coastal and Deep-Sea Marine Environments

(2011) Punyasloke Bhadury et al.   PLoS One

Aggregata bathytherma sp. nov. (Apicomplexa: Aggregatidae), a new coccidian parasite associated with a deep-sea hydrothermal vent octopus

(2010) C Gestal et al.   DISEASES OF AQUATIC ORGANISMS

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

(2010) Maria Vila-Costa et al.   ISME Journal

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

(2010) Wei Xie et al.   ISME Journal

Optimization of whole-transcriptome amplification from low cell density deep-sea microbial samples for metatranscriptomic analysis

(2010) Jieying Wu et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The phylogeography of the Placozoa suggests a taxon-rich phylum in tropical and subtropical waters

(2010) M. EITEL et al.   MOLECULAR ECOLOGY

Ecology and Biogeography of Free-Living Nematodes Associated with Chemosynthetic Environments in the Deep Sea: A Review

(2010) Ann Vanreusel et al.   PLoS One

Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice Metagenome

(2009) C. Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

(2009) K. T. Konstantinidis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal Diversity in Deep-Sea Hydrothermal Ecosystems

(2009) T. Le Calvez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterisation of dihydrodipicolinate synthase (DHDPS) from Bacillus anthracis

(2009) L.J. Domigan et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Predictability of marine nematode biodiversity

(2009) Bea Merckx et al.   ECOLOGICAL MODELLING

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

(2009) Martha Schattenhofer et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community structure in the North Pacific ocean

(2009) Mark V Brown et al.   ISME Journal

Importance of Proteins Controlling Initiation of DNA Replication in the Growth of the High-Pressure-Loving Bacterium Photobacterium profundum SS9

(2009) Z. W. El-Hajj et al.   JOURNAL OF BACTERIOLOGY

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

(2009) F. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Analyzing Gene Expression from Marine Microbial Communities using Environmental Transcriptomics

(2009) Rachel S. Poretsky et al.   Jove-Journal of Visualized Experiments

Regulation of aquatic microbial processes: the ‘microbial loop’ of the sunlit surface waters and the dark ocean dissected

(2008) GJ Herndl et al.   AQUATIC MICROBIAL ECOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Unveiling new microbial eukaryotes in the surface ocean

(2008) Ramon Massana et al.   CURRENT OPINION IN MICROBIOLOGY

Placozoa and the evolution of Metazoa and intrasomatic cell differentiation

(2008) Bernd Schierwater et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents

(2008) Nathalie Byrne et al.   ISME Journal

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

Deep water ventilation traced by Synechococcus cyanobacteria

(2008) Ivica Vilibić et al.   OCEAN DYNAMICS

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

(2008) Jack A. Gilbert et al.   PLoS One

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA