Article
Multidisciplinary Sciences
Seinen Chow, Takashi Yanagimoto, Haruko Takeyama
Summary: Analysis of partial mtDNA sequences of the Japanese spiny lobster using PCR revealed multiple haplotype groups and the presence of nuclear mitochondrial pseudogenes. Nucleotide sequence divergence indicated the similarity between genuine haplotypes and pseudogenes, suggesting a continuous and dynamic process of mtDNA integration into the nuclear genome.
SCIENTIFIC REPORTS
(2021)
Article
Genetics & Heredity
John King N. Layos, Cyrill John P. Godinez, Lawrence M. Liao, Yoshio Yamamoto, Joseph S. Masangkay, Hideyuki Mannen, Masahide Nishibori
Summary: This study provides a comprehensive analysis of the early dispersal history of Philippine pigs by analyzing their mitochondrial DNA. The results suggest a close genetic relationship between Philippine pigs and pigs from mainland Southeast Asia and Northeast Asia, indicating gene flow possibly resulting from human migration and trade. Despite geographic barriers, numerous genetic lineages have persisted across the Philippine islands. The study also reveals intriguing discrepancies between the ancestral pattern and distribution range of endemic Philippine wild pigs, offering new insights into the complexity of these animals.
FRONTIERS IN GENETICS
(2022)
Article
Genetics & Heredity
Hongtao Liu, Guangyuan Xia
Summary: This study characterized the complete mitochondrial genome of Pronghorn spiny lobster from the South China Sea for the first time, revealing its gene composition, nucleotide bias, and phylogenetic relationship with related species. The mitochondrial genome is 15,671 bp in length and shows biased nucleotide composition, with Pronghorn spiny lobster clustering with closely related species in the phylogenetic tree.
MITOCHONDRIAL DNA PART B-RESOURCES
(2021)
Article
Genetics & Heredity
Hongtao Liu, Liyun Pu
Summary: The study characterized the complete mitochondrial genome of longlegged spiny lobster and analyzed its gene composition, nucleotide bias, as well as phylogenetic relationship with other species.
MITOCHONDRIAL DNA PART B-RESOURCES
(2021)
Article
Biology
James Robertson, Andrew Jeffs, Christopher Hedges, Anthony J. R. Hickey
Summary: Isoeugenol, an anaesthetic used in the transportation of live lobsters, acts as a metabolic suppressant, reducing energy expenditure and improving survival rates. This study investigates the impact of isoeugenol on mitochondrial function, with a particular focus on respiration supported by complex I and cytochrome c oxidase. The results demonstrate that isoeugenol inhibits respiration through complex I and indicates it may act as a possible target for isoeugenol's effects.
JOURNAL OF EXPERIMENTAL BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Shaohua Fan, Jeffrey P. Spence, Yuanqing Feng, Matthew E. B. Hansen, Jonathan Terhorst, Marcia H. Beltrame, Alessia Ranciaro, Jibril Hirbo, William Beggs, Neil Thomas, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Alfred Njamnshi, Charles Folkunang, Dawit Wolde Meskel, Gurja Belay, Yun S. Song, Sarah A. Tishkoff
Summary: By conducting whole-genome sequencing of indigenous African populations, we identified numerous unreported variants and observed evidence of ancient population structure and introgression events from highly diverged ''ghost'' populations. We also found signatures of local adaptation for traits related to skin color, immune response, height, and metabolic processes.
Article
Fisheries
Ryan McGeady, Colm Lordan, Anne Marie Power
Summary: This study used a biophysical larval transport model to analyze larval dispersal of Norway lobsters off the coast of Ireland, finding that different areas had varying abilities to retain and exchange larvae influenced by local hydrodynamics. It was discovered that in the Aran grounds with consistently low larval supply, there was a 3-year lagged relationship between modelled larval dispersal indices and empirical adult burrow densities.
FISHERIES OCEANOGRAPHY
(2022)
Article
Environmental Sciences
Biao Chen, Kefu Yu, Qiucui Yao, Zhiheng Liao, Zhenjun Qin, Xiaopeng Yu, Qian Wu, Biao He
Summary: The study found that coral-eating crown-of-thorns starfish in the South China Sea underwent historical population expansion, with genetic characteristics being influenced by various environmental factors, and genetic structure possibly related to different nutrient concentrations.
FRONTIERS IN MARINE SCIENCE
(2021)
Article
Agriculture, Multidisciplinary
Yi GUO, Yong-meng HE, Bai-gao YANG, Wei-yi ZHANG, Bo-er CHEN, Yong-fu HUANG, Yong-ju ZHAO, Dan-ping ZHANG, Yue-hui MA, Ming-xing CHU, Guang-xin E, Ying GONG
Summary: Genetic diversity, population structure, and expansion history of goats were analyzed using mitochondrial DNA sequences. Goats showed high levels of genetic diversity and were divided into distinct haplogroups. The geographic variation had a significant but small effect on genetic differentiation. Domestic goats are likely descended from the wild ancestor Capra aegagrus.
JOURNAL OF INTEGRATIVE AGRICULTURE
(2022)
Article
Fisheries
Brady K. Quinn, Joel Chasse, Remy Rochette
Summary: The effect of temperature on the development rate of crustacean larvae has a significant impact on the population recruitment and connectivity. This study compared the dispersal and connectivity predictions of American lobster larvae using different temperature-dependent larval development functions. The results showed significant differences in the distances dispersed by larvae and the predicted connectivity among locations when different development functions were used.
FISHERIES OCEANOGRAPHY
(2022)
Article
Agronomy
Jinyu Li, Longqing Shi, Liette Vasseur, Qian Zhao, Jie Chen, Minsheng You, Shijun You
Summary: This study investigates the regional structure and demographic expansion patterns of Empoasca onukii populations in China, a highly destructive insect pest in tea plantations. The results reveal the influence of human activities and historical dissemination of tea on the current distribution and structure of E. onukii. Insights from this study provide an important basis for the development of area-wide management of E. onukii populations.
PEST MANAGEMENT SCIENCE
(2022)
Article
Infectious Diseases
Gunnar Hasle, Hans Petter Leinaas, Lise Heier, Aida Lopez Garcia, Knut Hakon Roed
Summary: The study found significant genetic differences between Ixodes ricinus found on blackbirds and robins, with the former primarily originating in continental Europe. Early spring blackbirds were found to carry ticks of mixed origins from both Great Britain and continental Europe, while later in the season, ticks carried by blackbirds were mainly acquired locally.
TICKS AND TICK-BORNE DISEASES
(2021)
Article
Biochemistry & Molecular Biology
Halvor Knutsen, Diana Catarino, Lauren Rogers, Marte Sodeland, Morten Mattingsdal, Marlene Jahnke, Jeffrey A. Hutchings, Ida Mellerud, Sigurd H. Espeland, Kerstin Johanneson, Olivia Roth, Michael M. Hansen, Sissel Jentoft, Carl Andre, Per Erik Jorde
Summary: Gene flow has a significant impact on spatial genetic structure and local adaptation. The presence or absence of a pelagic larval stage and the spatial distribution of suitable habitats play important roles in shaping gene flow and the genetic structure of populations. This study used whole genome sequencing and reduced representation sequencing data to analyze the genetic structure of the broadnosed pipefish. The findings revealed changes in population connectivity and were compared to two other fish species with a pelagic larval stage.
Article
Multidisciplinary Sciences
Mohammad Reza Ashrafzadeh, Rasoul Khosravi, Carlos Fernandes, Cecilia Aguayo, Zoltan Bagi, Vukan M. Lavadinovie, Laszlo Szendrei, Dejan Beukove, Bendeguz Mihalik, Szilvia Kusza
Summary: The study on genetic variation of introduced populations of common pheasants in Central and Southeast Europe revealed two distinct clades in the study area and genetic differentiation between Serbia and Hungary, with evidence of recent population expansion.
SCIENTIFIC REPORTS
(2021)
Article
Marine & Freshwater Biology
David B. Eggleston, Steven P. Searcy, Craig P. Dahlgren, Nathalie B. Reyns, Taylor A. Shropshire
Summary: Reef areas in the lower Florida Keys serve as a key nursery for reef species, with back reef habitats acting as conduits for larval spiny lobster, stone crabs, and fishes. The Atlantic Ocean is an important source for spiny lobster and lutjanid fish larvae, while the Gulf of Mexico is a source for stone crabs. Channel habitats play a critical role in supporting the nursery function of back reef habitats and should be considered in future ecosystem studies and spatial planning.
BULLETIN OF MARINE SCIENCE
(2023)
Article
Evolutionary Biology
Conrad A. Matthee, Natalie de Wet, Terence J. Robinson
Summary: The riverine rabbit, critically endangered and endemic to South Africa, has been found in a wider geographical area than previously thought. Studies show that the Northern and Southern populations responded differently to paleoclimatic changes, with the Southern population exhibiting a more stable demographic profile. Despite critically low population numbers, the riverine rabbit displays high mtDNA haplotypic diversity, emphasizing the need for subpopulation connectivity to maintain genetic diversity over time.
JOURNAL OF MAMMALIAN EVOLUTION
(2022)
Article
Biodiversity Conservation
Alicia Dalongeville, Erica S. Nielsen, Peter R. Teske, Sophie von Der Heyden
Summary: The study found that temperature variation is a prominent source of intraspecific genetic variation along the South African coastline characterized by high environmental heterogeneity. Genetic diversity differs between bioregions, but does not display higher levels within the core of each species' range when assessed across multiple species.
DIVERSITY AND DISTRIBUTIONS
(2022)
Article
Ecology
Jake M. Mulvaney, Michael Cherry, Conrad A. Matthee
Summary: The study reveals the impact of Pleistocene climate shifts on the genetic diversity and population structure of forest-dependent bird species in subtropical Afromontane and scarp forests in south-eastern South Africa. It suggests that these forests served as refugia for subtropical African avian forest biota during the late Pleistocene.
JOURNAL OF BIOGEOGRAPHY
(2022)
Article
Entomology
Deon K. Bakkes, Dikeledi E. Matloa, Ben J. Mans, Conrad A. Matthee
Summary: Distinct life stages and host-use strategies have significant effects on the morphology and developmental trajectories of Rhipicephalus ticks. The shape of the basal mouthpart structure is correlated with host size, with species using large hosts at early stages exhibiting adaptive features. However, species using small hosts at early stages have lost these features. Additionally, the developmental trajectories differ between different host-use strategies.
ARTHROPOD STRUCTURE & DEVELOPMENT
(2022)
Review
Ecology
Erica S. Nielsen, Jeffrey O. Hanson, Silvia B. Carvalho, Maria Beger, Romina Henriques, Francine Kershaw, Sophie von der Heyden
Summary: Integrative and proactive conservation approaches are essential for the long-term survival of biodiversity. Molecular data, although rarely used, can provide valuable insights for conserving biodiversity at different levels. This article bridges the gap between molecular ecology and systematic conservation planning, providing a practical guide for incorporating molecular data into spatial conservation planning tools. The proposed framework enhances interdisciplinary collaboration, which is key to achieving ambitious global conservation goals in the coming decade.
TRENDS IN ECOLOGY & EVOLUTION
(2023)
Article
Biodiversity Conservation
Veronica Mendoza-Portillo, Francisco J. Garcia-De Leon, Sophie von Der Heyden
Summary: In this study, the researchers examined the genetic diversity and population structure of the Almaco jack and found that climate change and fishing pressure can negatively impact the species' geographic distribution and genomic diversity. The loss of genomic diversity in the eastern-central Pacific Ocean can have significant effects on fisheries that rely on this resource.
GLOBAL CHANGE BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Sarah Forde, Sophie von Der Heyden, Alan Le Moan, Erica S. Nielsen, Deon Durholtz, Paulus Kainge, Johannes N. Kathena, Marek R. Lipinski, Hilkka O. N. Ndjaula, Conrad A. Matthee, Romina Henriques
Summary: Genomic information can be used to establish sustainable management plans for commercially exploited marine fishes, such as the southern African hakes. The study found that the two hake species, M. capensis and M. paradoxus, have similar levels of genomic diversity but exhibit different population structures. The findings provide valuable insights for conservation and management efforts for these commercially important species.
MOLECULAR ECOLOGY RESOURCES
(2023)
Editorial Material
Genetics & Heredity
Sophie von der Heyden
Summary: Sophie von der Heyden highlights a paper by Barber et al. that investigated the genetic structuring variations in populations of the mantis shrimp Haptosquilla pulchella, further enhancing our comprehension of the evolutionary dynamics of marine species.
NATURE REVIEWS GENETICS
(2023)
Article
Ecology
Mosihla Frederick Mokumo, Janine B. Adams, Sophie von Der Heyden
Summary: This study investigated the transplantation of endangered seagrass species, Zostera capensis, using different planting patterns and core sizes in two estuaries in South Africa. The results showed that there were no significant differences in transplantation success among different core sizes and patterns in the Knysna Estuary, but the compact pattern had better survival rates in the Klein Brak Estuary. The study highlighted the challenges of seagrass restoration in South Africa due to limited suitable habitats and environmental variability.
RESTORATION ECOLOGY
(2023)
Article
Parasitology
Conrad A. Matthee, Anandi Bierman, Boris R. Krasnov, Sonja Matthee, Luther van der Mescht
Summary: This study conducted a metagenetic analysis of flea samples collected from different sampling sites in South Africa, and found that the bacterial diversity of the parasites is influenced by host species and environmental factors. Differences in microbiome compositions were observed between different flea species and across geographic sampling sites, with temperature and humidity identified as potentially important environmental factors.
Article
Marine & Freshwater Biology
H. Beckett, O. K. Hansen, S. von der Heyden, G. F. Midgley
Summary: The African penguin population has declined rapidly due to anthropogenic activities such as habitat loss, competition for prey, and climate change. This decline is closely related to the reduction in the size and number of islands where the penguins nest, as well as shifts in the geographic distribution of these islands. These changes have important implications for assessing the vulnerability of the African penguin species.
AFRICAN JOURNAL OF MARINE SCIENCE
(2023)
Article
Multidisciplinary Sciences
Katie M. Watson, Deena Pillay, Sophie von der Heyden
Summary: This study investigates restoration strategies for the endangered Zostera capensis in South Africa, finding that transplanting cores is the most effective method for long-term persistence and cover, but it requires significant resources.
Article
Marine & Freshwater Biology
S. E. Smit, R. Henriques, M. Jackson, R. Taylor, L. Vivier, S. von der Heyden
Summary: Seagrasses, such as Zostera capensis, are facing threats from human activities and climate change in South Africa. This study reveals distinct population clusters and unique evolutionary signals among Z. capensis populations, particularly in the eastern regions of KwaZulu-Natal Province. The Mlalazi Estuary population shows low genomic diversity, possibly due to its small and dynamic nature. Conservation efforts should consider the unique characteristics of geographically close populations, especially during restoration.
AFRICAN JOURNAL OF MARINE SCIENCE
(2023)
Article
Biology
A. Malan, S. von der Heyden, S. Herron, J. P. Y. Arnould, R. Kirkwood, C. A. Matthee
Summary: This study examines the impact of past climatic change on marine diversification, with a focus on Southern Hemisphere species. Using the brown fur seal as a case study, the researchers assess the geographical structure and demographic history. The results reveal distinct geographic differences between previously defined subspecies and a demographic history characterized by population expansion and divergence during and after the Last Glacial Maximum. The study supports the idea that recent paleoclimatic changes have facilitated expansions in marine species and that postglacial sea-level rise acted as a dispersal barrier for continental shelf species.