Robust global microRNA expression profiling using next-generation sequencing technologies

SHRiMP2: Sensitive yet Practical Short Read Mapping

(2011) Matei David et al.   BIOINFORMATICS

Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs

(2010) Sylvain Pradervand et al.   BIOTECHNIQUES

Cross-platform analysis of global microRNA expression technologies

(2010) Carole L Yauk et al.   BMC GENOMICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Expression profiling of microRNAs by deep sequencing

(2009) C. J. Creighton et al.   BRIEFINGS IN BIOINFORMATICS

Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology

(2009) Fumiaki Sato et al.   PLoS One

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods

(2008) Robert A Ach et al.   BMC BIOTECHNOLOGY

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY

Multiplexed Detection Methods for Profiling MicroRNA Expression in Biological Samples

(2007) Alastair W. Wark et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION