Combining native MS approaches to decipher archaeal box H/ACA ribonucleoprotein particle structure and activity

RNA epigenetics

(2015) Nian Liu et al.   Translational Research

Dye label interference with RNA modification reveals 5-fluorouridine as non-covalent inhibitor

(2014) Felix Spenkuch et al.   NUCLEIC ACIDS RESEARCH

Structure of theAeropyrum pernixL7Ae multifunctional protein and insight into its extreme thermostability

(2013) Mohammad Wadud Bhuiya et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Integrative Modelling Coupled with Ion Mobility Mass Spectrometry Reveals Structural Features of the Clamp Loader in Complex with Single-Stranded DNA Binding Protein

(2013) Argyris Politis et al.   JOURNAL OF MOLECULAR BIOLOGY

Subunit Dynamics and Nucleotide-Dependent Asymmetry of an AAA+ Transcription Complex

(2013) Nan Zhang et al.   JOURNAL OF MOLECULAR BIOLOGY

Comparative Study of Two Box H/ACA Ribonucleoprotein Pseudouridine-Synthases: Relation between Conformational Dynamics of the Guide RNA, Enzyme Assembly and Activity

(2013) Jean-Baptiste Fourmann et al.   PLoS One

Native Tandem and Ion Mobility Mass Spectrometry Highlight Structural and Modular Similarities in Clustered-Regularly-Interspaced Shot-Palindromic-Repeats (CRISPR)-associated Protein Complexes FromEscherichia coliandPseudomonas aeruginosa

(2012) Esther van Duijn et al.   MOLECULAR & CELLULAR PROTEOMICS

Kinetic and thermodynamic characterization of the reaction pathway of box H/ACA RNA-guided pseudouridine formation

(2012) X. Yang et al.   NUCLEIC ACIDS RESEARCH

Integrating mass spectrometry of intact protein complexes into structural proteomics

(2012) Suk-Joon Hyung et al.   PROTEOMICS

Mass spectrometry: come of age for structural and dynamical biology

(2011) Justin LP Benesch et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase

(2011) S. Li et al.   GENES & DEVELOPMENT

The Products of 5-Fluorouridine by the Action of the Pseudouridine Synthase TruB Disfavor One Mechanism and Suggest Another

(2011) Edward J. Miracco et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Multimeric assembly and biochemical characterization of the Trax–translin endonuclease complex

(2011) Yuan Tian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Pre-steady-state kinetic analysis of the three Escherichia coli pseudouridine synthases TruB, TruA, and RluA reveals uniformly slow catalysis

(2011) J. R. Wright et al.   RNA

Mass Spectrometry Reveals Stable Modules in holo and apo RNA Polymerases I and III

(2011) Laura A. Lane et al.   STRUCTURE

Collision Cross Sections of Proteins and Their Complexes: A Calibration Framework and Database for Gas-Phase Structural Biology

(2010) Matthew F. Bush et al.   ANALYTICAL CHEMISTRY

The Handling of the Mechanistic Probe 5-Fluorouridine by the Pseudouridine Synthase TruA and Its Consistency with the Handling of the Same Probe by the Pseudouridine Synthases TruB and RluA

(2010) Marguerite K. McDonald et al.   BIOCHEMISTRY

Box H/ACA Small Ribonucleoproteins

(2010) Tamás Kiss et al.   MOLECULAR CELL

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

(2010) Kazuo Ishida et al.   NUCLEIC ACIDS RESEARCH

A Single Subunit Directs the Assembly of the Escherichia coli DNA Sliding Clamp Loader

(2010) Ah Young Park et al.   STRUCTURE

When proteomics meets structural biology

(2010) Min Zhou et al.   TRENDS IN BIOCHEMICAL SCIENCES

RNA and Protein Complexes oftrpRNA-Binding Attenuation Protein Characterized by Mass Spectrometry

(2009) Satoko Akashi et al.   ANALYTICAL CHEMISTRY

Ion mobility mass spectrometry of proteins and proteinassemblies

(2009) Charlotte Uetrecht et al.   CHEMICAL SOCIETY REVIEWS

18S rRNA processing requires base pairings of snR30 H/ACA snoRNA to eukaryote-specific 18S sequences

(2009) Eléonore Fayet-Lebaron et al.   EMBO JOURNAL

The Box H/ACA Ribonucleoprotein Complex: Interplay of RNA and Protein Structures in Post-transcriptional RNA Modification

(2009) Tomoko Hamma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Mechanism of Substrate RNA Recruitment in H/ACA RNA-Guided Pseudouridine Synthase

(2009) Jingqi Duan et al.   MOLECULAR CELL

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA

(2009) Bo Liang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Subunit Architecture of Multiprotein Assemblies Determined Using Restraints from Gas-Phase Measurements

(2009) Tara L. Pukala et al.   STRUCTURE

Native mass spectrometry: a bridge between interactomics and structural biology

(2008) Albert J R Heck   NATURE METHODS

Ion mobility–mass spectrometry analysis of large protein complexes

(2008) Brandon T Ruotolo et al.   Nature Protocols

Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs

(2008) Sébastien Muller et al.   NUCLEIC ACIDS RESEARCH