Plant hormone signalling through the eye of the mass spectrometer

A COFRADIC Protocol To Study Protein Ubiquitination

(2014) Elisabeth Stes et al.   JOURNAL OF PROTEOME RESEARCH

Strigolactone-Regulated Proteins Revealed by iTRAQ-Based Quantitative Proteomics in Arabidopsis

(2014) Zhou Li et al.   JOURNAL OF PROTEOME RESEARCH

Protein Abundance Changes and Ubiquitylation Targets Identified after Inhibition of the Proteasome with Syringolin A

(2014) Julia Svozil et al.   MOLECULAR & CELLULAR PROTEOMICS

Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediatesArabidopsisinnate immunity

(2014) Wenwei Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Surface ABP1-TMK Auxin-Sensing Complex Activates ROP GTPase Signaling

(2014) T. Xu et al.   SCIENCE

Auxin efflux by PIN-FORMED proteins is activated by two different protein kinases, D6 PROTEIN KINASE and PINOID

(2014) Melina Zourelidou et al.   eLife

Plant Protein Interactomes

(2013) Pascal Braun et al.   Annual Review of Plant Biology

From perception to attenuation: auxin signalling and responses

(2013) Wendy Ann Peer   CURRENT OPINION IN PLANT BIOLOGY

Ethylene signaling: simple ligand, complex regulation

(2013) Catharina Merchante et al.   CURRENT OPINION IN PLANT BIOLOGY

Mass spectrometry supported determination of protein complex structure

(2013) Thomas Walzthoeni et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Crossing paths: cytokinin signalling and crosstalk

(2013) S. El-Showk et al.   DEVELOPMENT

Gibberellin signaling in plants

(2013) J.-M. Daviere et al.   DEVELOPMENT

Quantitative Proteomics-Based Analysis Supports a Significant Role of GTG Proteins in Regulation of ABA Response in Arabidopsis Roots

(2013) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry

(2013) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth

(2013) Hongtao Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of BZR1-interacting Proteins as Potential Components of the Brassinosteroid Signaling Pathway inArabidopsisThrough Tandem Affinity Purification

(2013) Chunming Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Plant E3 Ligases: Flexible Enzymes in a Sessile World

(2013) Liyuan Chen et al.   Molecular Plant

From Squalene to Brassinolide: The Steroid Metabolic and Signaling Pathways across the Plant Kingdom

(2013) Cécile Vriet et al.   Molecular Plant

DWARF 53 acts as a repressor of strigolactone signalling in rice

(2013) Liang Jiang et al.   NATURE

D14–SCFD3-dependent degradation of D53 regulates strigolactone signalling

(2013) Feng Zhou et al.   NATURE

A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development

(2013) Hyunwoo Cho et al.   NATURE CELL BIOLOGY

Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography

(2013) Houjiang Zhou et al.   Nature Protocols

Large-scale identification of ubiquitination sites by mass spectrometry

(2013) Namrata D Udeshi et al.   Nature Protocols

Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets inArabidopsis

(2013) Do-Young Kim et al.   PLANT CELL

Jasmonate signalling: a copycat of auxin signalling?

(2013) A. CUÉLLAR PÉREZ et al.   PLANT CELL AND ENVIRONMENT

ABA signaling in stress-response and seed development

(2013) Kazuo Nakashima et al.   PLANT CELL REPORTS

Jasmonate signaling in plant development and defense response to multiple (a)biotic stresses

(2013) Angelo Santino et al.   PLANT CELL REPORTS

SUPPRESSOR OF MORE AXILLARY GROWTH2 1 Controls Seed Germination and Seedling Development in Arabidopsis

(2013) J. P. Stanga et al.   PLANT PHYSIOLOGY

Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics

(2013) Dominika Lewandowska et al.   PLoS One

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

(2013) P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative analysis of protein turnover in plants

(2013) Clark J. Nelson et al.   PROTEOMICS

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

bHLH Transcription Factors That Facilitate K+ Uptake During Stomatal Opening Are Repressed by Abscisic Acid Through Phosphorylation

(2013) Y. Takahashi et al.   Science Signaling

A proteomics study of auxin effects in Arabidopsis thaliana

(2012) Meiqing Xing et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

(2012) Marcus Bantscheff et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

Integration of shot-gun proteomics and bioinformatics analysis to explore plant hormone responses

(2012) Yixiang Zhang et al.   BMC BIOINFORMATICS

Determining Degradation and Synthesis Rates ofArabidopsisProteins Using the Kinetics of Progressive15N Labeling of Two-dimensional Gel-separated Protein Spots

(2012) Lei Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments

(2012) Namrata D. Udeshi et al.   MOLECULAR & CELLULAR PROTEOMICS

Effects of exogenous auxin and ethylene on the Arabidopsis root proteome

(2012) William O. Slade et al.   PHYTOCHEMISTRY

Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling

(2012) James A.H. Murray et al.   PLANT CELL

Proteome Analysis in Arabidopsis Reveals Shoot- and Root-Specific Targets of Cytokinin Action and Differential Regulation of Hormonal Homeostasis

(2012) M. Zd'arska et al.   PLANT PHYSIOLOGY

The protein expression landscape of the Arabidopsis root

(2012) J. J. Petricka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin and ethylene: collaborators or competitors?

(2012) Gloria K. Muday et al.   TRENDS IN PLANT SCIENCE

ABA-Dependent and -Independent G-Protein Signaling inArabidopsisRoots Revealed through an iTRAQ Proteomics Approach

(2011) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

(2011) Sebastian A. Wagner et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

SUMO and SUMOylation in plants

(2011) Hee Jin Park et al.   MOLECULES AND CELLS

PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1

(2011) Wenqiang Tang et al.   NATURE CELL BIOLOGY

The Cytokinin Receptors of Arabidopsis Are Located Mainly to the Endoplasmic Reticulum

(2011) K. Wulfetange et al.   PLANT PHYSIOLOGY

A proteomic approach to analyzing responses of Arabidopsis thaliana root cells to different gravitational conditions using an agravitropic mutant, pin2 and its wild type

(2011) Chao Tan et al.   Proteome Science

Cell Surface- and Rho GTPase-Based Auxin Signaling Controls Cellular Interdigitation in Arabidopsis

(2010) Tongda Xu et al.   CELL

Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling

(2010) P. Dhonukshe et al.   DEVELOPMENT

Proteomic Study Identifies Proteins Involved in Brassinosteroid Regulation of Rice Growth

(2010) Fengru Wang et al.   Journal of Integrative Plant Biology

Proteomic and Metabolic Profiling of Rice Suspension Culture Cells as a Model to Study Abscisic Acid Signaling Response Pathways in Plants

(2010) Sushma R. Rao et al.   JOURNAL OF PROTEOME RESEARCH

ABA-Regulated G Protein Signaling inArabidopsisGuard Cells: A Proteomic Perspective

(2010) Zhixin Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

(2010) Jelle Van Leene et al.   Molecular Systems Biology

NINJA connects the co-repressor TOPLESS to jasmonate signalling

(2010) Laurens Pauwels et al.   NATURE

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

(2010) Guoqiang Xu et al.   NATURE BIOTECHNOLOGY

TheArabidopsisCell Cycle F-Box Protein SKP2A Binds to Auxin

(2010) Silvia Jurado et al.   PLANT CELL

The ubiquitin-proteasome system regulates plant hormone signaling

(2010) Aaron Santner et al.   PLANT JOURNAL

Ethylene directs auxin to control root cell expansion

(2010) Lucia C. Strader et al.   PLANT JOURNAL

Sumoylation and other ubiquitin-like post-translational modifications in plants

(2010) Kenji Miura et al.   TRENDS IN CELL BIOLOGY

Auxin Perception--Structural Insights

(2010) L. I. Calderon-Villalobos et al.   Cold Spring Harbor Perspectives in Biology

Plant Protein-Protein Interaction Network and Interactome

(2009) Yixiang Zhang et al.   CURRENT GENOMICS

COP9 Signalosome- and 26S Proteasome-dependent Regulation of SCFTIR1Accumulation inArabidopsis

(2009) Johannes Stuttmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances and emerging trends in plant hormone signalling

(2009) Aaron Santner et al.   NATURE

PIN Auxin Efflux Carrier Polarity Is Regulated by PINOID Kinase-Mediated Recruitment into GNOM-Independent Trafficking in Arabidopsis

(2009) J. Kleine-Vehn et al.   PLANT CELL

Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis

(2009) Scott A. Saracco et al.   PLANT JOURNAL

Ratio-dependent significance thresholds in reciprocal15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment

(2009) Sylwia Kierszniowska et al.   PROTEOMICS

Sequential Transphosphorylation of the BRI1/BAK1 Receptor Kinase Complex Impacts Early Events in Brassinosteroid Signaling

(2008) Xiaofeng Wang et al.   DEVELOPMENTAL CELL

Proteomics Studies of Brassinosteroid Signal Transduction Using Prefractionation and Two-dimensional DIGE

(2008) Wenqiang Tang et al.   MOLECULAR & CELLULAR PROTEOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

(2008) Laurence V. Bindschedler et al.   PHYTOCHEMISTRY

Identification of ubiquitinated proteins in Arabidopsis

(2008) Concepción Manzano et al.   PLANT MOLECULAR BIOLOGY

BSKs Mediate Signal Transduction from the Receptor Kinase BRI1 in Arabidopsis

(2008) W. Tang et al.   SCIENCE

Boosting tandem affinity purification of plant protein complexes

(2008) Jelle Van Leene et al.   TRENDS IN PLANT SCIENCE

Regulation of Cullin RING Ligases

(2007) Sara K. Hotton et al.   Annual Review of Plant Biology

Quantitative analysis of auxin-regulated proteins from basal part of leaf sheaths in rice by two-dimensional difference gel electrophoresis

(2007) Fang Shi et al.   PHYTOCHEMISTRY