Differences in embryo quality are associated with differences in oocyte composition: A proteomic study in inbred mice

Histone Variants Enriched in Oocytes Enhance Reprogramming to Induced Pluripotent Stem Cells

(2014) Toshie Shinagawa et al.   Cell Stem Cell

Stage-Specific Proteome Signatures in Early Bovine Embryo Development

(2014) Daniela R. Deutsch et al.   JOURNAL OF PROTEOME RESEARCH

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Histone variant H3.3 is an essential maternal factor for oocyte reprogramming

(2014) D. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maternal age effect on mouse oocytes: new biological insight from proteomic analysis

(2014) Caroline Schwarzer et al.   REPRODUCTION

Screening for possible miRNA–mRNA associations in a colon cancer cell line

(2013) Sotaro Kanematsu et al.   GENE

Establishment of totipotency does not depend on Oct4A

(2013) Guangming Wu et al.   NATURE CELL BIOLOGY

Mouse Phenome Database

(2013) Stephen C. Grubb et al.   NUCLEIC ACIDS RESEARCH

MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency

(2013) Alexandre Gaspar-Maia et al.   Nature Communications

An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse

(2013) Lucia Daxinger et al.   GENOME BIOLOGY

IsoQuant: A Software Tool for Stable Isotope Labeling by Amino Acids in Cell Culture-Based Mass Spectrometry Quantitation

(2012) Zhongping Liao et al.   ANALYTICAL CHEMISTRY

ART culture conditions change the probability of mouse embryo gestation through defined cellular and molecular responses

(2012) C. Schwarzer et al.   HUMAN REPRODUCTION

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

(2012) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Heme Oxygenase-1 Expression in the Ovary Dictates a Proper Oocyte Ovulation, Fertilization, and Corpora Lutea Maintenance

(2011) Maria L. Zenclussen et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Proteomic Analysis of Mouse Oocytes Reveals 28 Candidate Factors of the “Reprogrammome”

(2011) Martin J. Pfeiffer et al.   JOURNAL OF PROTEOME RESEARCH

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Response: Cell fate in the early mouse embryo – sorting out the influence of developmental history on lineage choice

(2011) Yojiro Yamanaka   REPRODUCTIVE BIOMEDICINE ONLINE

Variance of Gene Expression Identifies Altered Network Constraints in Neurological Disease

(2011) Jessica C. Mar et al.   PLoS Genetics

Somatic cell nuclear reprogramming of mouse oocytes endures beyond reproductive decline

(2010) Telma Cristina Esteves et al.   AGING CELL

Validation and characterization of DNA microarray gene expression data distribution and associated moments

(2010) Reuben Thomas et al.   BMC BIOINFORMATICS

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming

(2010) Nishant Singhal et al.   CELL

Maternal control of early mouse development

(2010) L. Li et al.   DEVELOPMENT

Proteome of mouse oocytes at different developmental stages

(2010) Shufang Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of proteomics to identify highly abundant maternal factors that drive the egg-to-embryo transition

(2010) Piraye Yurttas et al.   REPRODUCTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Proteomic-based identification of maternal proteins in mature mouse oocytes

(2009) Ping Zhang et al.   BMC GENOMICS

Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb

(2009) Bo Feng et al.   NATURE CELL BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

EsrrbActivatesOct4Transcription and Sustains Self-renewal and Pluripotency in Embryonic Stem Cells

(2008) Xiaofei Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Protein Expression Profile of the Mouse Metaphase-II Oocyte

(2008) Minyue Ma et al.   JOURNAL OF PROTEOME RESEARCH

Subsets of cloned mouse embryos and their non-random relationship to development and nuclear reprogramming

(2007) Fatima M. Cavaleri et al.   MECHANISMS OF DEVELOPMENT