Frequent side chain methyl carbon-oxygen hydrogen bonding in proteins revealed by computational and stereochemical analysis of neutron structures

Measuring similarity between dynamic ensembles of biomolecules

(2014) Shan Yang et al.   NATURE METHODS

Effects of desolvation barriers and sidechains on local–nonlocal coupling and chevron behaviors in coarse-grained models of protein folding

(2014) Tao Chen et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

MolBridge: a program for identifying nonbonded interactions in small molecules and biomolecular structures

(2014) Prasun Kumar et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Conservation and Functional Importance of Carbon–Oxygen Hydrogen Bonding in AdoMet-Dependent Methyltransferases

(2013) Scott Horowitz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Carbon-Oxygen Hydrogen Bonding in Biological Structure and Function

(2012) Scott Horowitz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Direct observation of hydrogen atom dynamics and interactions by ultrahigh resolution neutron protein crystallography

(2012) J. C.- H. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HBonanza: A computer algorithm for molecular-dynamics-trajectory hydrogen-bond analysis

(2011) Jacob D. Durrant et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Definition of the hydrogen bond (IUPAC Recommendations 2011)

(2011) Elangannan Arunan et al.   PURE AND APPLIED CHEMISTRY

The active site protonation states of perdeuterated Toho-1 β-lactamase determined by neutron diffraction support a role for Glu166 as the general base in acylation

(2010) Stephen J. Tomanicek et al.   FEBS LETTERS

Charges in the hydrophobic interior of proteins

(2010) D. G. Isom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

High tolerance for ionizable residues in the hydrophobic interior of proteins

(2008) D. G. Isom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The origins of asymmetry in the folding transition states of protein L and protein G

(2002) John Karanicolas et al.   PROTEIN SCIENCE