4.3 Article

Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp N-1074

Journal

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 83, Issue 12, Pages 2230-2239

Publisher

WILEY-BLACKWELL
DOI: 10.1002/prot.24938

Keywords

crystal structure; enantioselectivity; halohydrin; lyase; Rossmann fold; NAD(P)H-dependent short-chain dehydrogenases/reductase

Funding

  1. Grants-in-Aid for Scientific Research [26102511] Funding Source: KAKEN

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Halohydrin hydrogen-halide-lyase (H-Lyase) is a bacterial enzyme that is involved in the degradation of halohydrins. This enzyme catalyzes the intramolecular nucleophilic displacement of a halogen by a vicinal hydroxyl group in halohydrins to produce the corresponding epoxides. The epoxide products are subsequently hydrolyzed by an epoxide hydrolase, yielding the corresponding 1, 2-diol. Until now, six different H-Lyases have been studied. These H-Lyases are grouped into three sub-types (A, B, and C) based on amino acid sequence similarities and exhibit different enantioselectivity. Corynebacterium sp. strain N-1074 has two different isozymes of H-Lyase, HheA (A-type) and HheB (B-type). We have determined their crystal structures to elucidate the differences in enantioselectivity among them. All three groups share a similar structure, including catalytic sites. The lack of enantioselectivity of HheA seems to be due to the relatively wide size of the substrate tunnel compared to that of other H-Lyases. Among the B-type H-Lyases, HheB shows relatively high enantioselectivity compared to that of HheB(GP1). This difference seems to be due to amino acid replacements at the active site tunnel. The binding mode of 1, 3-dicyano-2-propanol at the catalytic site in the crystal structure of the HheB-DiCN complex suggests that the product should be (R)-epichlorohydrin, which agrees with the enantioselectivity of HheB. Comparison with the structure of HheC provides a clue for the difference in their enantioselectivity. (C) 2015 Wiley Periodicals, Inc.

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