Global RNA Structure Analysis of Poliovirus Identifies a Conserved RNA Structure Involved in Viral Replication and Infectivity

A putative loop E motif and an H-H kissing loop interaction are conserved and functional features in a group C enterovirus RNA that inhibits ribonuclease L.

(2014) Hannah L. Townsend et al.   RNA Biology

Long-Range Architecture in a Viral RNA Genome

(2013) Eva J. Archer et al.   BIOCHEMISTRY

Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs

(2013) Elizabeth Pollom et al.   PLoS Pathogens

Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus

(2012) Adam S. Lauring et al.   Cell Host & Microbe

Developing and Applying Heterogeneous Phylogenetic Models with XRate

(2012) Oscar Westesson et al.   PLoS One

Identification of two functionally redundant RNA elements in the coding sequence of poliovirus using computer-generated design

(2012) Y. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring RNA Structural Codes with SHAPE Chemistry

(2011) Kevin M. Weeks et al.   ACCOUNTS OF CHEMICAL RESEARCH

Interstitial Contacts in an RNA-Dependent RNA Polymerase Lattice

(2011) Andres B. Tellez et al.   JOURNAL OF MOLECULAR BIOLOGY

Femtomole SHAPE Reveals Regulatory Structures in the Authentic XMRV RNA Genome

(2011) Jacob K. Grohman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

SHAPE-directed RNA secondary structure prediction

(2010) Justin T. Low et al.   METHODS

Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome

(2010) C. Gherghe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An RNA Element at the 5′-End of the Poliovirus Genome Functions as a General Promoter for RNA Synthesis

(2010) Dorothee A. Vogt et al.   PLoS Pathogens

Stochastic Kinetic Modeling of Vesicular Stomatitis Virus Intracellular Growth

(2009) Sebastian C. Hensel et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Genetic Inactivation of Poliovirus Infectivity by Increasing the Frequencies of CpG and UpA Dinucleotides within and across Synonymous Capsid Region Codons

(2009) C. C. Burns et al.   JOURNAL OF VIROLOGY

Bypass Suppression of Small-Plaque Phenotypes by a Mutation in Poliovirus 2A That Enhances Apoptosis

(2009) T. B. Burgon et al.   JOURNAL OF VIROLOGY

Secondary Structure of the Mature Ex Virio Moloney Murine Leukemia Virus Genomic RNA Dimerization Domain

(2009) C. Gherghe et al.   JOURNAL OF VIROLOGY

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Accurate Strand-Specific Quantification of Viral RNA

(2009) Nicole E. Plaskon et al.   PLoS One

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA

(2009) K. A. Wilkinson et al.   RNA

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

(2008) S. M. Vasa et al.   RNA

A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L

(2008) H. L. Townsend et al.   RNA

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

(2008) J. R. Coleman et al.   SCIENCE

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY