Highly Divergent Integration Profile of Adeno-Associated Virus Serotype 5 Revealed by High-Throughput Sequencing

High-Throughput Sequencing Reveals Principles of Adeno-Associated Virus Serotype 2 Integration

(2013) T. Janovitz et al.   JOURNAL OF VIROLOGY

The Adeno-Associated Virus Type 5 Small Rep Proteins Expressed via Internal Translation Initiation Are Functional

(2012) O. Fasina et al.   JOURNAL OF VIROLOGY

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

(2011) Ryan K. Dale et al.   BIOINFORMATICS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Translocation-Capture Sequencing Reveals the Extent and Nature of Chromosomal Rearrangements in B Lymphocytes

(2011) Isaac A. Klein et al.   CELL

Translocation capture sequencing: A method for high throughput mapping of chromosomal rearrangements

(2011) Thiago Y. Oliveira et al.   JOURNAL OF IMMUNOLOGICAL METHODS

The Amino Acid Linker between the Endonuclease and Helicase Domains of Adeno-Associated Virus Type 5 Rep Plays a Critical Role in DNA-Dependent Oligomerization

(2011) J. E. Maggin et al.   JOURNAL OF VIROLOGY

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity

(2011) Matthew D. Young et al.   NUCLEIC ACIDS RESEARCH

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Creating a Novel Origin of Replication through Modulating DNA-Protein Interfaces

(2010) F. Curtis Hewitt et al.   PLoS One

Integration Preferences of Wildtype AAV-2 for Consensus Rep-Binding Sites at Numerous Loci in the Human Genome

(2010) Daniela Hüser et al.   PLoS Pathogens

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Worldwide Epidemiology of Neutralizing Antibodies to Adeno‐Associated Viruses

(2009) Roberto Calcedo et al.   JOURNAL OF INFECTIOUS DISEASES

Adeno-Associated Virus Small Rep Proteins Are Modified with at Least Two Types of Polyubiquitination

(2009) K. D. Farris et al.   JOURNAL OF VIROLOGY

Reducing the Risk of Adeno-Associated Virus (AAV) Vector Mobilization with AAV Type 5 Vectors

(2009) F. C. Hewitt et al.   JOURNAL OF VIROLOGY

Adeno-Associated Virus Type 5 Utilizes Alternative Translation Initiation To Encode a Small Rep40-Like Protein

(2009) K. D. Farris et al.   JOURNAL OF VIROLOGY

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome

(2008) F. M. Pauler et al.   GENOME RESEARCH

Identification of Cellular Proteins That Interact with the Adeno-Associated Virus Rep Protein

(2008) K. Nash et al.   JOURNAL OF VIROLOGY