Genome reorganization in F1 hybrids uncovers the role of retrotransposons in reproductive isolation

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats

(2014) Natacha Senerchia et al.   NEW PHYTOLOGIST

Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers

(2014) S. Renaut et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Natural Pathways to Polyploidy in Plants and Consequences for Genome Reorganization

(2013) A. Tayalé et al.   CYTOGENETIC AND GENOME RESEARCH

Investigating Incipient Speciation in Arabidopsis lyrata from Patterns of Transmission Ratio Distortion

(2013) J. Leppala et al.   GENETICS

Evolutionary Dynamics of Retrotransposons Assessed by High-Throughput Sequencing in Wild Relatives of Wheat

(2013) Natacha Senerchia et al.   Genome Biology and Evolution

Hybridization, speciation and novelty

(2013) P. S. Soltis   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Transposable elements and microevolutionary changes in natural populations

(2013) Georgi Bonchev et al.   Molecular Ecology Resources

Reconstructing de novo silencing of an active plant retrotransposon

(2013) Arturo Marí-Ordóñez et al.   NATURE GENETICS

Copy number variation of transposable elements in Triticum–Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization

(2013) Beery Yaakov et al.   PLANT CELL REPORTS

Is junk DNA bunk? A critique of ENCODE

(2013) W. F. Doolittle   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

(2012) Michael Freeling et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome Evolution Due to Allopolyploidization in Wheat

(2012) M. Feldman et al.   GENETICS

Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)

(2012) B.R. Baum et al.   GENOME

Genome-specific introgression between wheat and its wild relativeAegilops triuncialis

(2012) C. Parisod et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic asymmetry in allopolyploid plants: wheat as a model

(2012) M. Feldman et al.   JOURNAL OF EXPERIMENTAL BOTANY

A general and simple method for obtainingR2from generalized linear mixed-effects models

(2012) Shinichi Nakagawa et al.   Methods in Ecology and Evolution

Size matters in Triticeae polyploids: larger genomes have higher remodeling

(2011) Miguel Bento et al.   GENOME

Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid

(2011) Beery Yaakov et al.   GENOME

Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis

(2010) Robert A. Martienssen   NEW PHYTOLOGIST

Mobilization of retrotransposons in synthetic allotetraploid tobacco

(2010) M. Petit et al.   NEW PHYTOLOGIST

A Small-RNA Perspective on Gametogenesis, Fertilization, and Early Zygotic Development

(2010) Déborah Bourc’his et al.   SCIENCE

Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae)

(2009) H. Meimberg et al.   AMERICAN JOURNAL OF BOTANY

Genome evolution in allopolyploid wheat—a revolutionary reprogramming followed by gradual changes

(2009) Moshe Feldman et al.   Journal of Genetics and Genomics

Selective epigenetic control of retrotransposition in Arabidopsis

(2009) Marie Mirouze et al.   NATURE

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

Impact of transposable elements on the organization and function of allopolyploid genomes

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

(2009) M. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

(2009) Eduard Kejnovsky et al.   TRENDS IN ECOLOGY & EVOLUTION

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

The strength and genetic basis of reproductive isolating barriers in flowering plants

(2008) D. B Lowry et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES