Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria

SecDF interacts with the SecYEG translocon in bacteria and enhances protein export in a proton-motive-force-dependent manner. Vibrio alginolyticus, a marine-estuarine bacterium, contains two SecDF paralogs, V. SecDF1 and V. SecDF2. Here, we show that the export-enhancing function of V. SecDF1 requires Na+ instead of H+, whereas V. SecDF2 is Na+-independent, presumably requiring H+. In accord with the cation-preference difference, V. SecDF2 was only expressed under limited Na+ concentrations whereas V. SecDF1 was constitutive. However, it is not the decreased concentration of Na+ per se that the bacterium senses to up-regulate the V. SecDF2 expression, because marked up-regulation of the V. SecDF2 synthesis was observed irrespective of Na+ concentrations under certain genetic/physiological conditions: (i) when the secDF1VA gene was deleted and (ii) whenever the Sec export machinery was inhibited. VemP (Vibrio export monitoring polypeptide), a secretory polypeptide encoded by the upstream ORF of secDF2VA, plays the primary role in this regulation by undergoing regulated translational elongation arrest, which leads to unfolding of the Shine-Dalgarno sequence for translation of secDF2VA. Genetic analysis of V. alginolyticus established that the VemP-mediated regulation of SecDF2 is essential for the survival of this marine bacterium in low-salinity environments. These results reveal that a class of marine bacteria exploits nascentchain ribosome interactions to optimize their protein export pathways to propagate efficiently under different ionic environments that they face in their life cycles.