Systematic transcriptome analysis reveals tumor-specific isoforms for ovarian cancer diagnosis and therapy

The Role of Lipolysis Stimulated Lipoprotein Receptor in Breast Cancer and Directing Breast Cancer Cell Behavior

(2014) Denise K. Reaves et al.   PLoS One

HLA-Binding Properties of Tumor Neoepitopes in Humans

(2014) E. F. Fritsch et al.   Cancer Immunology Research

Assessing the impact of human genome annotation choice on RNA-seq expression estimates

(2013) Po-Yen Wu et al.   BMC BIOINFORMATICS

Fusion genes and their discovery using high throughput sequencing

(2013) M.J. Annala et al.   CANCER LETTERS

A Genome-Wide Aberrant RNA Splicing in Patients with Acute Myeloid Leukemia Identifies Novel Potential Disease Markers and Therapeutic Targets

(2013) Sophia Adamia et al.   CLINICAL CANCER RESEARCH

Gene Expression Analyses Support Fallopian Tube Epithelium as the Cell of Origin of Epithelial Ovarian Cancer

(2013) Daniel O'Shannessy et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Molecular Fingerprint of High Grade Serous Ovarian Cancer Reflects Its Fallopian Tube Origin

(2013) Mirjana Kessler et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A New Method for Quantitative Real-Time Polymerase Chain Reaction Data Analysis

(2013) Xiayu Rao et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Modified mRNA directs the fate of heart progenitor cells and induces vascular regeneration after myocardial infarction

(2013) Lior Zangi et al.   NATURE BIOTECHNOLOGY

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Evaluation of DNA from the Papanicolaou Test to Detect Ovarian and Endometrial Cancers

(2013) I. Kinde et al.   Science Translational Medicine

Ectopic Activation of Germline and Placental Genes Identifies Aggressive Metastasis-Prone Lung Cancers

(2013) S. Rousseaux et al.   Science Translational Medicine

ETV1, 4 and 5: An oncogenic subfamily of ETS transcription factors

(2012) Sangphil Oh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Abstract 4875: Human HER2 and PI3K H1047R cooperate to promote mammary tumorigenesis in vivo

(2012) Ariella B. Hanker et al.   CANCER RESEARCH

The Impact of Tumor Heterogeneity on Patient Treatment Decisions

(2012) C. J. Farhangfar et al.   CLINICAL CHEMISTRY

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

(2012) C. Howald et al.   GENOME RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

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(2012) Rikke Leth-Larsen et al.   MOLECULAR MEDICINE

Embryonic Stem Cell Markers

(2012) Wenxiu Zhao et al.   MOLECULES

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

MFEprimer-2.0: a fast thermodynamics-based program for checking PCR primer specificity

(2012) Wubin Qu et al.   NUCLEIC ACIDS RESEARCH

An in-depth map of polyadenylation sites in cancer

(2012) Yuefeng Lin et al.   NUCLEIC ACIDS RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

High-grade serous ovarian cancer arises from fallopian tube in a mouse model

(2012) J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linear motifs: lost in (pre)translation

(2012) Robert J. Weatheritt et al.   TRENDS IN BIOCHEMICAL SCIENCES

Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns

(2012) Duncan Sproul et al.   GENOME BIOLOGY

FOXM1 coming of age: time for translation into clinical benefits?

(2012) Muy-Teck Teh   Frontiers in Oncology

uMELT: prediction of high-resolution melting curves and dynamic melting profiles of PCR products in a rich web application

(2011) Zachary Dwight et al.   BIOINFORMATICS

Upregulation of CD9 in ovarian cancer is related to the induction of TNF-α gene expression and constitutive NF-κB activation

(2011) Jae Ryoung Hwang et al.   CARCINOGENESIS

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

(2011) Tim R Mercer et al.   NATURE BIOTECHNOLOGY

Predicting the functional impact of protein mutations: application to cancer genomics

(2011) Boris Reva et al.   NUCLEIC ACIDS RESEARCH

Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged

(2010) C. J. David et al.   GENES & DEVELOPMENT

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations

(2010) F. F. Gonzalez-Galarza et al.   NUCLEIC ACIDS RESEARCH

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Cancer-associated regulation of alternative splicing

(2009) Julian P Venables et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Novel Molecular Subtypes of Serous and Endometrioid Ovarian Cancer Linked to Clinical Outcome

(2008) R. W. Tothill et al.   CLINICAL CANCER RESEARCH