Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum

Heavy water and15N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats

(2015) Sebastian H. Kopf et al.   ENVIRONMENTAL MICROBIOLOGY

Denitrification by cystic fibrosis pathogens – Stenotrophomonas maltophilia is dormant in sputum

(2015) Mette Kolpen et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model

(2015) Laura M. Filkins et al.   JOURNAL OF BACTERIOLOGY

Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation

(2015) Elise S. Cowley et al.   mBio

Characterization of Metabolically Quiescent Leishmania Parasites in Murine Lesions Using Heavy Water Labeling

(2015) Joachim Kloehn et al.   PLoS Pathogens

Polymorphonuclear Leukocytes Restrict Growth of Pseudomonas aeruginosa in the Lungs of Cystic Fibrosis Patients

(2014) Kasper N. Kragh et al.   INFECTION AND IMMUNITY

Stochasticity of metabolism and growth at the single-cell level

(2014) Daniel J. Kiviet et al.   NATURE

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

(2014) David Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of FISH and CARD-FISH on the isotopic composition of 13C- and 15N-labeled Pseudomonas putida cells measured by nanoSIMS

(2014) Niculina Musat et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Persisters, persistent infections and the Yin–Yang model

(2014) Ying Zhang   Emerging Microbes & Infections

Stable-Isotope Probing Reveals That Hydrogen Isotope Fractionation in Proteins and Lipids in a Microbial Community Are Different and Species-Specific

(2013) Curt R. Fischer et al.   ACS Chemical Biology

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Assessing sub-seafloor microbial activity by combined stable isotope probing with deuterated water and 13C-bicarbonate

(2012) Gunter Wegener et al.   ENVIRONMENTAL MICROBIOLOGY

Look@NanoSIMS - a tool for the analysis of nanoSIMS data in environmental microbiology

(2012) Lubos Polerecky et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas aeruginosa Directly Shunts  -Oxidation Degradation Intermediates into De Novo Fatty Acid Biosynthesis

(2012) Y. Yuan et al.   JOURNAL OF BACTERIOLOGY

Fatty Acid Biosynthesis in Pseudomonas aeruginosa Is Initiated by the FabY Class of  -Ketoacyl Acyl Carrier Protein Synthases

(2012) Y. Yuan et al.   JOURNAL OF BACTERIOLOGY

Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry

(2012) Stephen S. Chen et al.   Molecular BioSystems

Impact of Enhanced Staphylococcus DNA Extraction on Microbial Community Measures in Cystic Fibrosis Sputum

(2012) Jiangchao Zhao et al.   PLoS One

Autotrophy as a predominant mode of carbon fixation in anaerobic methane-oxidizing microbial communities

(2012) M. Y. Kellermann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Review: Staphylococcus aureus and MRSA in cystic fibrosis

(2011) Christopher H. Goss et al.   Journal of Cystic Fibrosis

Carbon and nitrogen assimilation in deep subseafloor microbial cells

(2011) Y. Morono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of phenotypic heterogeneity permits Salmonella evasion of the host caspase-1 inflammatory response

(2011) M. K. Stewart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active Starvation Responses Mediate Antibiotic Tolerance in Biofilms and Nutrient-Limited Bacteria

(2011) D. Nguyen et al.   SCIENCE

Metabolic Regulation of Mycobacterial Growth and Antibiotic Sensitivity

(2011) Seung-Hun Baek et al.   PLOS BIOLOGY

Failure to Recover to Baseline Pulmonary Function after Cystic Fibrosis Pulmonary Exacerbation

(2010) Don B. Sanders et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Impact of Staphylococcus aureus on the pathogenesis of chronic cystic fibrosis lung disease

(2010) Barbara C. Kahl   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Reduction of Clofazimine by Mycobacterial Type 2 NADH:Quinone Oxidoreductase

(2010) Takahiro Yano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Selection of Direct Transesterification as the Preferred Method for Assay of Fatty Acid Content of Microalgae

(2010) M. J. Griffiths et al.   LIPIDS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility

(2009) K. Stoecker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Large D/H variations in bacterial lipids reflect central metabolic pathways

(2009) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Memory Effects in Compound-Specific D/H Analysis by Gas Chromatography/Pyrolysis/Isotope-Ratio Mass Spectrometry

(2008) Ying Wang et al.   ANALYTICAL CHEMISTRY

The protonmotive force is required for maintaining ATP homeostasis and viability of hypoxic, nonreplicating Mycobacterium tuberculosis

(2008) S. P. S. Rao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA