Design of a biochemical circuit motif for learning linear functions

Signal Propagation in Multi-Layer DNAzyme Cascades Using Structured Chimeric Substrates

(2014) Carl W. Brown et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Catalytic Molecular Logic Devices by DNAzyme Displacement

(2014) Carl W. Brown et al.   CHEMBIOCHEM

Training an asymmetric signal perceptron through reinforcement in an artificial chemistry

(2014) P. Banda et al.   Journal of the Royal Society Interface

Computational Design of Nucleic Acid Feedback Control Circuits

(2014) Boyan Yordanov et al.   ACS Synthetic Biology

Online Learning in a Chemical Perceptron

(2013) Peter Banda et al.   ARTIFICIAL LIFE

Deoxyribozyme Cascade for Visual Detection of Bacterial RNA

(2013) Yulia V. Gerasimova et al.   CHEMBIOCHEM

Scaling down DNA circuits with competitive neural networks

(2013) A. J. Genot et al.   Journal of the Royal Society Interface

Synthetic circuits integrating logic and memory in living cells

(2013) Piro Siuti et al.   NATURE BIOTECHNOLOGY

Programmable chemical controllers made from DNA

(2013) Yuan-Jyue Chen et al.   Nature Nanotechnology

Predator–Prey Molecular Ecosystems

(2012) Teruo Fujii et al.   ACS Nano

Multianalyte Digital Enzyme Biosensors with Built-in Boolean Logic

(2012) Evgeny Katz et al.   ANALYTICAL CHEMISTRY

Combinatorial Displacement of DNA Strands: Application to Matrix Multiplication and Weighted Sums

(2012) Anthony J. Genot et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Design and analysis of DNA strand displacement devices using probabilistic model checking

(2012) M. R. Lakin et al.   Journal of the Royal Society Interface

Reconfigurable DNA Origami to Generate Quasifractal Patterns

(2012) Fei Zhang et al.   NANO LETTERS

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

Synthetic two-way communication between mammalian cells

(2012) William Bacchus et al.   NATURE BIOTECHNOLOGY

Rewritable digital data storage in live cells via engineered control of recombination directionality

(2012) J. Bonnet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures

(2012) M. Langecker et al.   SCIENCE

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Evolution of Associative Learning in Chemical Networks

(2012) Simon McGregor et al.   PLoS Computational Biology

Expanding the Rule Set of DNA Circuitry with Associative Toehold Activation

(2011) Xi Chen   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reversible Logic Circuits Made of DNA

(2011) Anthony J. Genot et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Remote Toehold: A Mechanism for Flexible Control of DNA Hybridization Kinetics

(2011) Anthony J. Genot et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A simple DNA gate motif for synthesizing large-scale circuits

(2011) L. Qian et al.   Journal of the Royal Society Interface

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Programming an in vitro DNA oscillator using a molecular networking strategy

(2011) K. Montagne et al.   Molecular Systems Biology

Neural network computation with DNA strand displacement cascades

(2011) Lulu Qian et al.   NATURE

Programmable molecular recognition based on the geometry of DNA nanostructures

(2011) Sungwook Woo et al.   Nature Chemistry

Dynamic DNA nanotechnology using strand-displacement reactions

(2011) David Yu Zhang et al.   Nature Chemistry

Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

(2011) L. Qian et al.   SCIENCE

Multi-Input RNAi-Based Logic Circuit for Identification of Specific Cancer Cells

(2011) Z. Xie et al.   SCIENCE

DNA Origami with Complex Curvatures in Three-Dimensional Space

(2011) D. Han et al.   SCIENCE

Digital biosensors with built-in logic for biomedical applications—biosensors based on a biocomputing concept

(2010) Joseph Wang et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Amplified Detection of DNA through an Autocatalytic and Catabolic DNAzyme-Mediated Process

(2010) Fuan Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Enzyme-based logic systems for information processing

(2010) Evgeny Katz et al.   CHEMICAL SOCIETY REVIEWS

Cooperative Hybridization of Oligonucleotides

(2010) David Yu Zhang   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Training a molecular automaton to play a game

(2010) Renjun Pei et al.   Nature Nanotechnology

DNA computing circuits using libraries of DNAzyme subunits

(2010) Johann Elbaz et al.   Nature Nanotechnology

DNA as a universal substrate for chemical kinetics

(2010) D. Soloveichik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

(2010) D. G. Gibson et al.   SCIENCE

Enzyme-BasedNANDandNORLogic Gates with Modular Design

(2009) Jian Zhou et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Control of DNA Strand Displacement Kinetics Using Toehold Exchange

(2009) David Yu Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Molecular circuits for associative learning in single-celled organisms

(2008) C. T Fernando et al.   Journal of the Royal Society Interface

DNAzyme technology and cancer therapy: cleave and let die

(2008) C. R. Dass et al.   MOLECULAR CANCER THERAPEUTICS

Predictive Behavior Within Microbial Genetic Networks

(2008) I. Tagkopoulos et al.   SCIENCE

Nonnegative Matrix Factorization Based on Alternating Nonnegativity Constrained Least Squares and Active Set Method

(2008) Hyunsoo Kim et al.   SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS