Designing and encoding models for synthetic biology

SYCAMORE--a systems biology computational analysis and modeling research environment

(2008) A. Weidemann et al.   BIOINFORMATICS

Computational design of synthetic gene circuits with composable parts

(2008) M.A. Marchisio et al.   BIOINFORMATICS

SynBioSS: the synthetic biology modeling suite

(2008) Anthony D. Hill et al.   BIOINFORMATICS

The CellML Model Repository

(2008) C. M. Lloyd et al.   BIOINFORMATICS

LibSBML: an API Library for SBML

(2008) B. J. Bornstein et al.   BIOINFORMATICS

SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks

(2008) Andreas Dräger et al.   BMC Systems Biology

Optimization in computational systems biology

(2008) Julio R Banga   BMC Systems Biology

A critical examination of stoichiometric and path-finding approaches to metabolic pathways

(2008) F. J. Planes et al.   BRIEFINGS IN BIOINFORMATICS

Stoichiometric modelling of cell metabolism

(2008) Francisco Llaneras et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Multiscale agent-based cancer modeling

(2008) Le Zhang et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

(2008) Shai Kaplan et al.   MOLECULAR CELL

Refinement and standardization of synthetic biological parts and devices

(2008) Barry Canton et al.   NATURE BIOTECHNOLOGY

Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009

(2008) M. Y. Galperin et al.   NUCLEIC ACIDS RESEARCH