4.6 Article

Meta Analysis of Functional Neuroimaging Data via Bayesian Spatial Point Processes

Journal

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
Volume 106, Issue 493, Pages 124-134

Publisher

AMER STATISTICAL ASSOC
DOI: 10.1198/jasa.2011.ap09735

Keywords

Bayesian hierarchical model; Emotion study; Latent process; Spatial birth-death process; Spatial independent cluster process

Funding

  1. U.S. NIH [R01-MH069326, 1RC1DA028608, R21MH082308]
  2. MRC [G0900908] Funding Source: UKRI
  3. Medical Research Council [G0900908] Funding Source: researchfish

Ask authors/readers for more resources

As the discipline of functional neuroimaging grows there is an increasing interest in meta analysis of brain imaging studies. A typical neuroimaging meta analysis collects peak activation coordinates (foci) from several studies and identifies areas of consistent activation. Most imaging meta analysis methods only produce null hypothesis inferences and do not provide an interpretable fitted model. To overcome these limitations, we propose a Bayesian spatial hierarchical model using a marked independent cluster process. We model the foci as offspring of a latent study center process, and the study centers are in turn offspring of a latent population center process. The posterior intensity function of the population center process provides inference on the location of population centers, as well as the interstudy variability of foci about the population centers. We illustrate our model with a meta analysis consisting of 437 studies from 164 publications, show how two subpopulations of studies can be compared and assess our model via sensitivity analyses and simulation studies. Supplemental materials are available online.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Mathematical & Computational Biology

Optimizing Graphical Procedures for Multiplicity Control in a Confirmatory Clinical Trial via Deep Learning

Tianyu Zhan, Alan Hartford, Jian Kang, Walter Offen

Summary: This article evaluates the performance of two existing constrained methods and proposes a deep learning enhanced optimization framework. By using feedforward neural networks to approximate the objective function and utilizing gradient information for optimization, our method achieves a better balance between robustness and time efficiency.

STATISTICS IN BIOPHARMACEUTICAL RESEARCH (2022)

Article Biology

A spatial Bayesian latent factor model for image-on-image regression

Cui Guo, Jian Kang, Timothy D. Johnson

Summary: Image-on-image regression analysis is challenging due to high dimensionality and complex spatial dependence. The proposed model effectively captures spatial dependence among image outcomes and predictors, achieving better prediction accuracy and dimension reduction. By incorporating spatial Bayesian latent factor model and Gaussian process priors, the method demonstrates improved performance in predicting task-related contrast maps in multimodal image data.

BIOMETRICS (2022)

Article Biology

Stratified Cox models with time-varying effects for national kidney transplant patients: A new blockwise steepest ascent method

Kevin He, Ji Zhu, Jian Kang, Yi Li

Summary: Analyzing the national transplant database, a blockwise steepest ascent procedure is proposed to fit a time-varying effect model, with a Wald statistic used to test if effects indeed vary over time. The utility of the method is evaluated through simulations and applied to analyze national kidney transplant data, detecting time-varying effects of various risk factors.

BIOMETRICS (2022)

Article Public, Environmental & Occupational Health

Spatiotemporal distribution and control measure evaluation of droplets and aerosol clouds in dental procedures

Chao Yuan, Hongtao Yang, Siyuan Zheng, Xiangyu Sun, Xiaochi Chen, Yuntao Chen, Jian Kang, Moubin Liu, Shuguo Zheng

Summary: In this study, the distributions of dental splatters and the effectiveness of corresponding control measures were evaluated using high-speed videography and laser diffraction. The majority of dental splatters were found to be small droplets (<50 µm). The combination of high-volume evacuation and suction air purifier was able to clear away most of the droplets and aerosols.

INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2023)

Article Biology

Bayesian interaction selection model for multimodal neuroimaging data analysis

Yize Zhao, Ben Wu, Jian Kang

Summary: In functional neuroimaging studies, identifying predictive imaging markers and intermodality interactions is crucial for understanding brain activity. This paper presents a unified Bayesian prior model that simultaneously identifies main effect features and intermodality interactions using intermediate selection status, improving posterior inference accuracy and enhancing biological plausibility. Extensive simulations and application to real data demonstrate the superiority of this approach.

BIOMETRICS (2023)

Article Respiratory System

The effect of D-cycloserine on brain processing of breathlessness over pulmonary rehabilitation: an experimental medicine study

Sarah L. Finnegan, Olivia K. Harrison, Sara Booth, Andrea Dennis, Martyn Ezra, Catherine J. Harmer, Mari Herigstad, Bryan Guillaume, Thomas E. Nichols, Najib M. Rahman, Andrea Reinecke, Olivier Renaud, Kyle T. S. Pattinson

Summary: The study found that D-cycloserine did not improve the efficacy of pulmonary rehabilitation in treating chronic breathlessness. However, it did interact with breathlessness anxiety. Therefore, a phase 3 clinical trial of D-cycloserine may not be worthwhile.

ERJ OPEN RESEARCH (2023)

Article Gastroenterology & Hepatology

Liver disease is a significant risk factor for cardiovascular outcomes - A UK Biobank study

Adriana Roca-Fernandez, Rajarshi Banerjee, Helena Thomaides-Brears, Alison Telford, Arun Sanyal, Stefan Neubauer, Thomas E. Nichols, Betty Raman, Celeste McCracken, Steffen E. Petersen, Ntobeko A. B. Ntusi, Daniel J. Cuthbertson, Michele Lai, Andrea Dennis, Amitava Banerjee

Summary: This study found that early signs of liver disease, measured by cT1, were associated with an increased risk of cardiovascular disease. Liver disease activity (cT1) was associated with major CVD events, CVD hospitalisation, and all-cause mortality, while liver fat (PDFF) was not associated.

JOURNAL OF HEPATOLOGY (2023)

Article Radiology, Nuclear Medicine & Medical Imaging

Image-Based Biological Heart Age Estimation Reveals Differential Aging Patterns Across Cardiac Chambers

Ahmed M. M. Salih, Esmeralda Ruiz Pujadas, Victor M. Campello, Celeste McCracken, Nicholas C. C. Harvey, Stefan Neubauer, Karim Lekadir, Thomas E. E. Nichols, Steffen E. E. Petersen, Zahra Raisi-Estabragh

Summary: This study estimates the biological age of different cardiac regions using magnetic resonance imaging radiomics phenotypes and investigates the determinants of aging in those regions. The results show associations between age gap and factors like visceral adiposity, mental health, dental problems, and bone mineral density.

JOURNAL OF MAGNETIC RESONANCE IMAGING (2023)

Article Statistics & Probability

Statistical Inferences for Complex Dependence of Multimodal Imaging Data

Jinyuan Chang, Jing He, Jian Kang, Mingcong Wu

Summary: This article proposes rigorous statistical testing procedures for making inferences on the complex dependence of multimodal imaging data. The proposed methods address three hypothesis testing problems and include a global testing procedure and a multiple testing procedure controlling the false discovery rate. Extensive simulations and analysis of task fMRI contrast maps validate the accuracy and effectiveness of the proposed methods.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2023)

Letter Multidisciplinary Sciences

Reply to: Multivariate BWAS can be replicable with moderate sample sizes

Brenden Tervo-Clemmens, Scott Marek, Roselyne J. Chauvin, Andrew N. Van, Benjamin P. Kay, Timothy O. Laumann, Wesley K. Thompson, Thomas E. Nichols, B. T. Thomas Yeo, Deanna M. Barch, Beatriz Luna, Damien A. Fair, Nico U. F. Dosenbach

NATURE (2023)

Article Multidisciplinary Sciences

Telomere length and brain imaging phenotypes in UK Biobank

Anya C. Topiwala, Thomas Nichols, Logan Z. J. Williams, Emma Robinson, Fidel P. Alfaro-Almagro, Bernd L. Taschler, Chaoyue Wang, Christopher J. Nelson, Karla M. Miller, Veryan Codd, Nilesh Samani, Stephen Smith

Summary: Telomeres form protective caps at the ends of chromosomes and their attrition is linked to biological aging. Short telomeres are associated with increased risk of neurological and psychiatric disorders, including dementia. The relationship between telomere length and neuroimaging markers is not well-defined.

PLOS ONE (2023)

Article Biology

Simultaneous selection and inference for varying coefficients with zero regions: a soft-thresholding approach

Yuan Yang, Ziyang Pan, Jian Kang, Chad Brummett, Yi Li

Summary: Varying coefficient models with zero regions are proposed in this study. The new modeling approach allows for variable selection, detects zero regions, obtains point estimates of varying coefficients, and constructs sparse confidence intervals accommodating zero regions. The asymptotic properties of the estimator are proven for statistical inference. Simulation results show that the proposed sparse confidence intervals have desired coverage probability. The method is applied to analyze a large-scale preoperative opioid study.

BIOMETRICS (2023)

Article Mathematical & Computational Biology

A scalable approach for continuous time Markov models with covariates

Farhad Hatami, Alex Ocampo, Gordon Graham, Thomas E. Nichols, Habib Ganjgahi

Summary: In this article, an optimization technique for fitting continuous time Markov models (CTMM) in the presence of covariates is proposed. This technique combines a stochastic gradient descent algorithm with differentiation of the matrix exponential using a Pade approximation, making it feasible to fit large scale data. Two methods for computing standard errors are presented, one utilizing the Pade expansion and the other using power series expansion of the matrix exponential. Simulation results show improved performance compared to existing CTMM methods, and the method is demonstrated on a large-scale multiple sclerosis NO.MS dataset.

BIOSTATISTICS (2023)

Article Neurosciences

Associations between cortisol stress responses and limbic volume and thickness in young adults: An exploratory study

Gina-Isabelle Henze, Julian Konzok, Brigitte M. Kudielka, Stefan Wuest, Thomas E. Nichols, Ludwig Kreuzpointner

Summary: This study investigated the relationship between neural measures of limbic structures and hypothalamic pituitary adrenal axis responses to acute stress exposure in healthy young adults. The findings suggest that limbic volume and thickness measures are associated with acute cortisol stress responses, providing new insights into the involvement of striato-limbic structures in psychosocial stress processing.

EUROPEAN JOURNAL OF NEUROSCIENCE (2023)

Article Statistics & Probability

Image response regression via deep neural networks

Daiwei Zhang, Lexin Li, Chandra Sripada, Jian Kang

Summary: A novel non-parametric approach is proposed to delineate associations between images and covariates using deep neural networks in the framework of spatially varying coefficient models. The method incorporates spatial smoothness, handles subject heterogeneity, and provides straightforward interpretations. It is also highly flexible and accurate, making it ideal for capturing complex association patterns.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2023)

No Data Available