Metabolic De-Isotoping for Improved LC-MS Characterization of Modified RNAs

Mass spectrometry sequencing of transfer ribonucleic acids by the comparative analysis of RNA digests (CARD) approach

(2013) Siwei Li et al.   ANALYST

The global identification of tRNA isoacceptors by targeted tandem mass spectrometry

(2013) Collin Wetzel et al.   ANALYST

The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species

(2013) Ismaïl Moukadiri et al.   NUCLEIC ACIDS RESEARCH

Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability

(2013) Sibylle E. Wohlgemuth et al.   NUCLEIC ACIDS RESEARCH

Method for Comparative Analysis of Ribonucleic Acids Using Isotope Labeling and Mass Spectrometry

(2012) Siwei Li et al.   ANALYTICAL CHEMISTRY

Characterization of Modified RNA by Top-Down Mass Spectrometry

(2012) Monika Taucher et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting

(2012) Nathaniel D Maynard et al.   Molecular Systems Biology

Dynamic changes in translational efficiency are deduced from codon usage of the transcriptome

(2012) Hila Gingold et al.   NUCLEIC ACIDS RESEARCH

Speeding with control: codon usage, tRNAs, and ribosomes

(2012) Eva Maria Novoa et al.   TRENDS IN GENETICS

tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA inHaloferax volcanii

(2012) Jennifer Gebetsberger et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Metatranscriptomic Analysis of Microbes in an Oceanfront Deep-Subsurface Hot Spring Reveals Novel Small RNAs and Type-Specific tRNA Degradation

(2011) Shinnosuke Murakami et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global identification of transfer RNAs by liquid chromatography–mass spectrometry (LC–MS)

(2011) Collin Wetzel et al.   Journal of Proteomics

tRNA biology charges to the front

(2010) E. M. Phizicky et al.   GENES & DEVELOPMENT

Relative quantitation of transfer RNAs using liquid chromatography mass spectrometry and signature digestion products

(2010) Colette M. Castleberry et al.   NUCLEIC ACIDS RESEARCH

The RNA modification database, RNAMDB: 2011 update

(2010) W. A. Cantara et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs

(2010) M. Saikia et al.   RNA

A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress

(2010) Clement T. Y. Chan et al.   PLoS Genetics

Minimizing18O/16O back-exchange in the relative quantification of ribonucleic acids

(2009) Colette M. Castleberry et al.   JOURNAL OF MASS SPECTROMETRY

Top-down tandem mass spectrometry of tRNA via ion trap collision-induced dissociation

(2009) Teng-Yi Huang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping

(2009) Rune Matthiesen et al.   NUCLEIC ACIDS RESEARCH

tRNA over-expression in breast cancer and functional consequences

(2009) Mariana Pavon-Eternod et al.   NUCLEIC ACIDS RESEARCH

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics