Clustering and Filtering Tandem Mass Spectra Acquired in Data-Independent Mode

EasyProt — An easy-to-use graphical platform for proteomics data analysis

(2012) Florent Gluck et al.   Journal of Proteomics

Faster, Quantitative, and Accurate Precursor Acquisition Independent From Ion Count

(2011) Alexandre Panchaud et al.   ANALYTICAL CHEMISTRY

Data-independent Proteomic Screen Identifies Novel Tamoxifen Agonist that Mediates Drug Resistance

(2011) Shawna Mae Hengel et al.   JOURNAL OF PROTEOME RESEARCH

An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

(2011) Erik Ahrné et al.   PROTEOMICS

XDIA: improving on the label-free data-independent analysis

(2010) Paulo C. Carvalho et al.   BIOINFORMATICS

Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry

(2009) Marshall Bern et al.   ANALYTICAL CHEMISTRY

Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses

(2008) Alexander Scherl et al.   PROTEOMICS

Clustering Millions of Tandem Mass Spectra

(2007) Ari M. Frank et al.   JOURNAL OF PROTEOME RESEARCH