Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering

Bacteria dominate ammonia oxidation in soils used for outdoor cattle overwintering

(2014) Viviane Radl et al.   APPLIED SOIL ECOLOGY

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

(2014) Guo-Chun Ding et al.   PLoS One

Bacterial community in alpine grasslands along an altitudinal gradient on the Tibetan Plateau

(2013) Yanli Yuan et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Changes in soil microbial communities as affected by intensive cattle husbandry

(2012) D. Elhottová et al.   APPLIED SOIL ECOLOGY

Cattle impact on composition of archaeal, bacterial, and fungal communities by comparative fingerprinting of total and extracellular DNA

(2012) A. Chroňáková et al.   BIOLOGY AND FERTILITY OF SOILS

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

(2012) Yunfeng Yang et al.   GLOBAL CHANGE BIOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

CREST – Classification Resources for Environmental Sequence Tags

(2012) Anders Lanzén et al.   PLoS One

Interactions between land-use history and earthworms control gross rates of soil methane production in an overwintering pasture

(2012) Robert L. Bradley et al.   SOIL BIOLOGY & BIOCHEMISTRY

Natural Niche for Organohalide-Respiring Chloroflexi

(2011) Mark J. Krzmarzick et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaeal community dynamics and detection of ammonia-oxidizing archaea during composting of cattle manure using culture-independent DNA analysis

(2011) Nozomi Yamamoto et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Effects of the earthworm Eisenia andrei on methanogens in a cattle-impacted soil: A microcosm study

(2011) Anna Koubová et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Intermediate grazing intensities by sheep increase soil bacterial diversities in an Inner Mongolian steppe

(2010) Xiaoqi Zhou et al.   BIOLOGY AND FERTILITY OF SOILS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Land Use Intensity Controls Actinobacterial Community Structure

(2010) Patrick Hill et al.   MICROBIAL ECOLOGY

Effect of the nitrification inhibitor dicyandiamide (DCD) on microbial communities in a pasture soil amended with bovine urine

(2010) Maureen O’Callaghan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of acetate on soil respiration, N2O emissions and gross N transformations related to fungi and bacteria in a grassland soil

(2009) R.J. Laughlin et al.   APPLIED SOIL ECOLOGY

Composting of animal manures and chemical criteria for compost maturity assessment. A review

(2009) M.P. Bernal et al.   BIORESOURCE TECHNOLOGY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota

(2009) Laura E. Lehtovirta et al.   FEMS MICROBIOLOGY ECOLOGY

Diverse archaeal community of a bat guano pile in Domica Cave (Slovak Karst, Slovakia)

(2009) A. Chroňáková et al.   FOLIA MICROBIOLOGICA

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Overwintering management on upland pasture causes shifts in an abundance of denitrifying microbial communities, their activity and N2O-reducing ability

(2009) Alica Chroňáková et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile

(2008) C. M. Hansel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis

(2008) On Chim Chan et al.   FEMS MICROBIOLOGY ECOLOGY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY