The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization

A genome-wide survey of bHLH transcription factors in the Placozoan Trichoplax adhaerens reveals the ancient repertoire of this gene family in metazoan

(2014) Fuki Gyoja   GENE

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

PIFs: Systems Integrators in Plant Development

(2014) P. Leivar et al.   PLANT CELL

Transcriptome and Biochemical Analyses Revealed a Detailed Proanthocyanidin Biosynthesis Pathway in Brown Cotton Fiber

(2014) Yue-Hua Xiao et al.   PLoS One

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

(2014) M. R. Woodhouse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Classification and evolutionary analysis of the basic helix-loop-helix gene family in the green anole lizard, Anolis carolinensis

(2013) Ake Liu et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Xiao-Ming Song et al.   MOLECULAR GENETICS AND GENOMICS

Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

CottonGen: a genomics, genetics and breeding database for cotton research

(2013) Jing Yu et al.   NUCLEIC ACIDS RESEARCH

Frenemies: Antagonistic bHLH/bZIP Transcription Factors Integrate Light and Reactive Oxygen Species Signaling inArabidopsis

(2013) Jennifer Lockhart   PLANT CELL

A Genetic and Metabolic Analysis Revealed that Cotton Fiber Cell Development Was Retarded by Flavonoid Naringenin

(2013) J. Tan et al.   PLANT PHYSIOLOGY

Evolution of the bHLH Genes Involved in Stomatal Development: Implications for the Expansion of Developmental Complexity of Stomata in Land Plants

(2013) Jin-Hua Ran et al.   PLoS One

The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis

(2012) Lei Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome Evolution Due to Allopolyploidization in Wheat

(2012) M. Feldman et al.   GENETICS

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

MYC2: The Master in Action

(2012) Kemal Kazan et al.   Molecular Plant

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

A Triple Helix-Loop-Helix/Basic Helix-Loop-Helix Cascade Controls Cell Elongation Downstream of Multiple Hormonal and Environmental Signaling Pathways in Arabidopsis

(2012) M.-Y. Bai et al.   PLANT CELL

Molecular Mechanisms of Fiber Differential Development between G. barbadense and G. hirsutum Revealed by Genetical Genomics

(2012) Xiangdong Chen et al.   PLoS One

Structure, expression differentiation and evolution of duplicated fiber developmental genes in Gossypium barbadense and G. hirsutum

(2011) Huayu Zhu et al.   BMC PLANT BIOLOGY

Phylogenetic Analysis and Classification of the Fungal bHLH Domain

(2011) J. K. Sailsbery et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L

(2011) Daojun Yuan et al.   PLoS One

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)

(2011) Y. Bao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids

(2011) R. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

(2010) Sinara Artico et al.   BMC PLANT BIOLOGY

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)

(2009) Bhupendra Chaudhary et al.   BMC GENOMICS

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

(2009) N. Pires et al.   MOLECULAR BIOLOGY AND EVOLUTION

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

(2008) Lex Flagel et al.   BMC BIOLOGY

A preliminary analysis of genome structure and composition in Gossypium hirsutum

(2008) Wangzhen Guo et al.   BMC GENOMICS

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

(2008) Ran Hovav et al.   PLoS Genetics