Comparative Analysis of the Orphan CRISPR2 Locus in 242 Enterococcus faecalis Strains

Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40

(2015) Melanie Zischka et al.   BMC GENOMICS

The Contribution of Genetic Recombination to CRISPR Array Evolution

(2015) Anne Kupczok et al.   Genome Biology and Evolution

CRISPR adaptation biases explain preference for acquisition of foreign DNA

(2015) Asaf Levy et al.   NATURE

Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages

(2015) Clément Lier et al.   Frontiers in Genetics

Population Biology of Intestinal Enterococcus Isolates from Hospitalized and Nonhospitalized Individuals in Different Age Groups

(2014) Ana P. Tedim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow

(2014) Nathan L Bachmann et al.   BMC GENOMICS

Genome Sequencing Reveals the Environmental Origin of Enterococci and Potential Biomarkers for Water Quality Monitoring

(2014) Michael R. Weigand et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity

(2014) Rodolphe Barrangou et al.   MOLECULAR CELL

CRISPRs: Molecular Signatures Used for Pathogen Subtyping

(2013) Nikki Shariat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nonclinical and Clinical Enterococcus faecium Strains, but Not Enterococcus faecalis Strains, Have Distinct Structural and Functional Genomic Features

(2013) Eun Bae Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity

(2013) Alexandra E. Briner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Outbreak of Fluoroquinolone-Resistant Escherichia coli Infections after Transrectal Ultrasound—Guided Biopsy of the Prostate

(2013) Donald Dumford et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

Antimicrobial-Resistant Pathogens Associated with Healthcare-Associated Infections Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010

(2012) Dawn M. Sievert et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

The highly dynamic CRISPR1 system ofStreptococcus agalactiaecontrols the diversity of its mobilome

(2012) Maria-José Lopez-Sanchez et al.   MOLECULAR MICROBIOLOGY

CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

(2012) Laëtitia Fabre et al.   PLoS One

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

(2012) K. L. Palmer et al.   mBio

Adjusted Wallace Coefficient as a Measure of Congruence between Typing Methods

(2011) Ana Severiano et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Genetic Basis for In Vivo Daptomycin Resistance in Enterococci

(2011) Cesar A. Arias et al.   NEW ENGLAND JOURNAL OF MEDICINE

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Mechanism of chromosomal transfer of Enterococcus faecalis pathogenicity island, capsule, antimicrobial resistance, and other traits

(2010) J. M. Manson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multidrug-Resistant Enterococci Lack CRISPR-cas

(2010) K. L. Palmer et al.   mBio

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF

(2008) Agathe Bourgogne et al.   GENOME BIOLOGY