Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage

Charting the dynamics of translation

(2014) Dominique Chu et al.   BIOSYSTEMS

Synonymous codons, ribosome speed, and eukaryotic gene expression regulation

(2014) Daniel Tarrant et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Deducing the Kinetics of Protein Synthesis In Vivo from the Transition Rates Measured In Vitro

(2014) Sophia Rudorf et al.   PLoS Computational Biology

A Kinetic Safety Gate Controlling the Delivery of Unnatural Amino Acids to the Ribosome

(2013) Joerg Mittelstaet et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Coordinated conformational and compositional dynamics drive ribosome translocation

(2013) Jin Chen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dynamics of translation by single ribosomes through mRNA secondary structures

(2013) Chunlai Chen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Positively Charged Residues Are the Major Determinants of Ribosomal Velocity

(2013) Catherine A. Charneski et al.   PLOS BIOLOGY

Effects of codon sequence on the dynamics of genetic networks

(2012) Ilya Potapov et al.   JOURNAL OF THEORETICAL BIOLOGY

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads

(2012) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

GENETIC CODE REDUNDANCY AND ITS INFLUENCE ON THE ENCODED POLYPEPTIDES

(2012) Paige S. Spencer et al.   Computational and Structural Biotechnology Journal

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Evolutionary optimization of speed and accuracy of decoding on the ribosome

(2011) I. Wohlgemuth et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis

(2011) C. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Dynamics of Supply and Demand in mRNA Translation

(2011) Chris A. Brackley et al.   PLoS Computational Biology

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

Optimization of speed and accuracy of decoding in translation

(2010) Ingo Wohlgemuth et al.   EMBO JOURNAL

Real-time tRNA transit on single translating ribosomes at codon resolution

(2010) Sotaro Uemura et al.   NATURE

Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy

(2010) Niels Fischer et al.   NATURE

Global and local depletion of ternary complex limits translational elongation

(2010) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

What recent ribosome structures have revealed about the mechanism of translation

(2009) T. Martin Schmeing et al.   NATURE

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

(2009) Günter Kramer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Generic Algorithm to Predict the Speed of Translational Elongation: Implications for Protein Biogenesis

(2009) Gong Zhang et al.   PLoS One

Effects of Codon Distributions and tRNA Competition on Protein Translation

(2008) Hermioni Zouridis et al.   BIOPHYSICAL JOURNAL

The termination of translation

(2008) Sabine Petry et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Ribosome Collisions and Translation Efficiency: Optimization by Codon Usage and mRNA Destabilization

(2008) Namiko Mitarai et al.   JOURNAL OF MOLECULAR BIOLOGY

The Kinetics of Ribosomal Peptidyl Transfer Revisited

(2008) Magnus Johansson et al.   MOLECULAR CELL

Following translation by single ribosomes one codon at a time

(2008) Jin-Der Wen et al.   NATURE