4.8 Article

Alkene Hydroboration: Hot Intermediates That React While They Are Cooling

Journal

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
Volume 132, Issue 39, Pages 13621-13623

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/ja105100f

Keywords

-

Funding

  1. EPSRC
  2. Engineering and Physical Sciences Research Council [EP/G00224X/1, EP/E019374/1] Funding Source: researchfish
  3. EPSRC [EP/E019374/1, EP/G00224X/1] Funding Source: UKRI

Ask authors/readers for more resources

Non-TST behavior has recently attracted a great deal of attention. If such behavior is general, then the standard way in which synthetic chemists rationalize and predict reactivity and selectivity would be at least partially invalid. The work in this article was inspired by recent results which highlighted a departure from the predictions of TST for rationalization of the regiochemical outcome of the hydroboration reaction mechanism, suggesting that the isomeric product ratios arise because of nonstatistical dynamical effects (J. Am. Chem. Soc. 2009, 131, 3130-3131). We suggest, based on new calculations using a weak collision RRKM-Master Equation (ME) model, an alternative interpretation of the experimental results which preserves a statistical reaction model. While it is a common assumption that all intermediates and transition states along the reaction path are in thermal equilibrium with solvent, our ME results show that hot intermediates may react while they are undergoing stepwise relaxation through weak collisions, even in solution. To our knowledge, this work represents the first application of master equation methodology to a solution phase thermal reaction in organic chemistry that cannot be otherwise explained using conventional TST. Explicit modeling of solvent and solute dynamics is often prohibitively expensive; however, the master equation offers a computationally tractable model with considerable predictive power that may be utilized to investigate whether stepwise collisional relaxation is prevalent in other polyatomic systems.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Applied

On the Importance of Considering Multinuclear Metal Sites in Homogeneous Catalysis Modeling

Akinobu Matsuzawa, Jeremy N. Harvey, Fahmi Himo

Summary: This review highlights the importance of computational studies in realizing that bimetallic complexes are the active catalytic species in some reactions, rather than monometallic complexes as previously assumed. The combination of experimental observations and computation of metal precursor speciation is a powerful tool in predicting the presence of bimetallic intermediates or transition states.

TOPICS IN CATALYSIS (2022)

Article Chemistry, Medicinal

Divide and Conquer. Pocket-Opening Mixed-Solvent Simulations in the Perspective of Docking Virtual Screening Applications for Drug Discovery

Francesc Sabanes Zariquiey, Edgar Jacoby, Ann Vos, Herman W. T. van Vlijmen, Gary Tresadern, Jeremy Harvey

Summary: The combination of mixed-solvent molecular dynamics (MD) and time-structure independent component analysis (TICA) was applied to four retrospective case studies, and the results were compared with previous experimental and computational findings. It was found that the successful identification of cryptic pockets depends on the system and the cosolvent probes. The conformational state of the targets plays a critical role in docking studies with the parent ligands, which has implications for virtual screening applications.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2022)

Article Chemistry, Organic

Pd-Catalyzed Ring Restructuring of Oxazolidines with Alkenes Leading to Fused Polycyclic Indolizines

Xianjun Xu, Huangdi Feng, Xiaoyong Zhang, Liangliang Song, Luc Van Meervelt, Johan Van der Eycken, Jeremy N. Harvey, Erik V. Van der Eycken

Summary: A palladium-catalyzed reaction for the synthesis of fused polycyclic indolizines has been developed. Experimental and theoretical studies suggest that the reaction involves C-C and C-O bond cleavage, providing a new approach for heterocycle synthesis.

ORGANIC LETTERS (2022)

Article Chemistry, Applied

Readily Reconfigurable Continuous-Stirred Tank Photochemical Reactor Platform

Daniel Francis, A. John Blacker, Nikil Kapur, Stephen P. Marsden

Summary: The new modular photochemical continuous stirred-tank reactor (CSTR) design utilizes light-source units developed for the fReactor CSTR platform, making it suitable for both homogeneous and multiphasic reactions. By using slurries as input feeds, the system intensifies photochemical brominations, and its modular nature facilitates the integration of downstream reaction steps.

ORGANIC PROCESS RESEARCH & DEVELOPMENT (2022)

Article Chemistry, Physical

Effect of solvent motions on the dynamics of the Diels-Alder reaction

Xiaoyong Zhang, Pierre-Louis Lefebvre, Jeremy N. Harvey

Summary: The solvent environment has minimal influence on transition state passage dynamics of the Diels-Alder reaction in aprotic solvents, with the notable effect occurring far from the transition state region where reactants are caged within the reactant well.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2022)

Article Chemistry, Medicinal

A unified top-down approach for the synthesis of diverse lead-like molecular scaffolds

Chloe Townley, Lindsay McMurray, Stephen P. Marsden, Adam Nelson

Summary: A top-down synthetic approach was used to efficiently synthesize 21 diverse novel molecular scaffolds, which were derived from complex intermediates prepared using cycloaddition chemistry. Scaffold-hopping of these intermediates was achieved through ring attachment, cleavage, expansion, and/or fusion, leading to the generation of diverse lead-like screening compounds.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2022)

Article Chemistry, Multidisciplinary

An automated method for graph-based chemical space exploration and transition state finding

Pablo Ramos-Sanchez, Jeremy N. Harvey, Jose A. Gamez

Summary: A novel algorithm is proposed to explore the chemical space by generating reaction networks using heuristics based on chemical theory. The algorithm improves performance by considering only transformations that break two chemical bonds and form two new ones. It estimates energy barriers using quantum chemical calculations and can also identify missed species during the previous step to further define the reaction network. The algorithm has successfully identified the most important reaction pathways in five different chemical reactions.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

Synthesis of spirocyclic 1,2-diamines by dearomatising intramolecular diamination of phenols

Anthony Aimon, Mark J. Dow, Abigail R. Hanby, Ephraim A. Okolo, Christopher M. Pask, Adam Nelson, Stephen P. Marsden

Summary: The stereocontrolled synthesis of complex spirotricyclic systems containing an embedded syn-1,2-diaminocyclohexane unit is achieved through a dearomatising oxidation of phenols bearing pendant ureas capable of acting as double nucleophiles. The resultant products possess rich functionality suitable for the synthesis of potentially bioactive compounds.

CHEMICAL COMMUNICATIONS (2023)

Article Chemistry, Multidisciplinary

Scaffold Remodelling of Diazaspirotricycles Enables Synthesis of Diverse sp3-Rich Compounds With Distinct Phenotypic Effects

Ephraim A. Okolo, Axel Pahl, Sonja Sievers, Christopher M. Pask, Adam Nelson, Stephen P. Marsden

Summary: A 'top down' scaffold remodelling approach was used to synthesize a library of spirotricyclic ureas via complexity-generating oxidative dearomatisation. Eighteen structurally distinct, sp(3)-rich scaffolds were obtained from the parent tricycle through ring addition, cleavage, and expansion strategies. Biological screening of the compound library based on these scaffolds revealed diverse phenotypic responses, highlighting both functional and structural diversity of the compounds.

CHEMISTRY-A EUROPEAN JOURNAL (2023)

Article Chemistry, Physical

Quantifying the Cooperative Process of Molecular Self-Assembly on Surfaces: A Case Study of Isophthalic Acids

Tamara Rinkovec, Demian Kalebic, Mark Van der Auweraer, Wim Dehaen, Jeremy N. Harvey, Steven De Feyter

Summary: In this study, the effect of concentration on the self-assembled molecular network formation process was investigated using scanning tunneling microscopy. Isophthalic acids were chosen as a model system, and the adsorption behavior was evaluated at the nanoscale. The results showed the existence of a critical concentration for self-assembly, with the molecular structure having a significant impact on this threshold value. Furthermore, highly cooperative behavior was observed at the liquid/solid interface, providing a rare example of quantitative measurement of cooperative phenomena.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Physical

Computational mechanistic analysis of a cationic Suzuki-Miyaura reaction without added base

Tolga Yaman, Jeremy N. N. Harvey

Summary: Novel density functional theory (DFT) calculations were performed to investigate the mechanism of a base-free Suzuki-Miyaura cross-coupling reaction with phosphine ligands. The results are consistent with experimental findings and suggest a mechanism involving recycling of the arylboronic acid moiety. Our calculations focus on the transmetalation and reductive elimination steps.

CATALYSIS SCIENCE & TECHNOLOGY (2023)

Article Chemistry, Physical

Machine Learning Representations of the Three Lowest Adiabatic Electronic Potential Energy Surfaces for the ArH2 + Reactive System

Maarten Konings, Jeremy N. Harvey, Jeïrome Loreau

Summary: In this work, Gaussian process regression machine learning representations of the three lowest coupled 2A' adiabatic electronic potential energy surfaces of the ArH2+ reactive system are presented. The nonadiabatic coupling matrix elements are also calculated. Accurate ab initio electronic structure calculations, taking into account the spin-orbit coupling, serve as input for the machine learning training process. The fitted potential energy surfaces show high accuracies, meeting the requirements for chemical dynamics at low temperature.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Multidisciplinary

Modular synthesis of bicyclic twisted amides and anilines

Alexandra Hindle, Krzysztof Baj, Jonathan A. Iggo, Daniel J. Cox, Christopher M. Pask, Adam Nelson, Stephen P. Marsden

Summary: A convergent approach to diazabicyclic scaffolds containing twisted amides or anilines is achieved through photocatalysed hydroamination and subsequent cyclisation of cyclic enecarbamates. The modular synthesis enables variation of the degree of twist and consequently the properties of the amides and anilines.

CHEMICAL COMMUNICATIONS (2023)

Article Chemistry, Physical

Quantifying the Cooperative Process of Molecular Self-Assembly on Surfaces: A Case Study of Isophthalic Acids

Tamara Rinkovec, Demian Kalebic, Mark Van der Auweraer, Wim Dehaen, Jeremy N. Harvey, Steven De Feyter

Summary: This study investigates the effect of concentration on the self-assembly process of molecular networks using scanning tunneling microscopy. The research aims to improve the understanding of 2D supramolecular chemistry by obtaining quantitative data. The results show highly cooperative behavior and the significant impact of molecular structure on the critical concentration.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Multidisciplinary

Multicomponent synthesis of substituted pyridines via a catalytic intermolecular aza-Wittig/Diels-Alder sequence

Mary E. Bayana, J. Steven Wailes, Stephen P. Marsden

Summary: A two-step process has been developed to rapidly access diverse tri- and tetrasubstituted pyridines by utilizing a range of reactants.

RSC ADVANCES (2022)

No Data Available