Multi-Scale Genomic, Transcriptomic and Proteomic Analysis of Colorectal Cancer Cell Lines to Identify Novel Biomarkers
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Multi-Scale Genomic, Transcriptomic and Proteomic Analysis of Colorectal Cancer Cell Lines to Identify Novel Biomarkers
Authors
Keywords
Colorectal cancer, Gene expression, HT29 cells, Protein expression, Apoptosis, SW480 cells, MAPK signaling cascades, Cancer treatment
Journal
PLoS One
Volume 10, Issue 12, Pages e0144708
Publisher
Public Library of Science (PLoS)
Online
2015-12-18
DOI
10.1371/journal.pone.0144708
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- MiR-1204 sensitizes nasopharyngeal carcinoma cells to paclitaxel bothin vitroandin vivo
- (2015) Xiaowei Peng et al. CANCER BIOLOGY & THERAPY
- Recurrent genomic alterations in sequential progressive leukoplakia and oral cancer: drivers of oral tumorigenesis?
- (2014) N. K. Cervigne et al. HUMAN MOLECULAR GENETICS
- Integrated analysis of genome-wide copy number alterations and gene expression in microsatellite stable, CpG island methylator phenotype-negative colon cancer
- (2013) Lenora W. M. Loo et al. GENES CHROMOSOMES & CANCER
- Molecular Pathways Involved in Colorectal Cancer: Implications for Disease Behavior and Prevention
- (2013) Dora Colussi et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- A colorectal cancer classification system that associates cellular phenotype and responses to therapy
- (2013) Anguraj Sadanandam et al. NATURE MEDICINE
- Molecular mechanisms of tumor resistance to PI3K-mTOR-targeted therapy
- (2013) Jing Tan et al. Chinese Journal of Cancer
- Genomic profiling of rectal adenoma and carcinoma by array-based comparative genomic hybridization
- (2012) Zhi-Zhou Shi et al. BMC Medical Genomics
- Programmed cell death 6, a novel p53-responsive gene, targets to the nucleus in the apoptotic response to DNA damage
- (2012) Kazuho Suzuki et al. CANCER SCIENCE
- Developmental pathways in colon cancer
- (2012) Fred E. Bertrand et al. CELL CYCLE
- Integrative Genomics Identified RFC3 As an Amplified Candidate Oncogene in Esophageal Adenocarcinoma
- (2012) W. W. Lockwood et al. CLINICAL CANCER RESEARCH
- Prognostic and predictive biomarkers for epidermal growth factor receptor-targeted therapy in colorectal cancer: Beyond KRAS mutations
- (2012) Ana Custodio et al. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY
- APRIN is a cell cycle specific BRCA2-interacting protein required for genome integrity and a predictor of outcome after chemotherapy in breast cancer
- (2012) Rachel Brough et al. EMBO JOURNAL
- Transcript and protein profiling identifies signaling, growth arrest, apoptosis, and NF-κB survival signatures following GNRH receptor activation
- (2012) Colette Meyer et al. ENDOCRINE-RELATED CANCER
- PDCD6 is an independent predictor of progression free survival in epithelial ovarian cancer
- (2012) Dan Su et al. Journal of Translational Medicine
- Identification of a 7-gene signature that predicts relapse and survival for early stage patients with cervical carcinoma
- (2012) Long Huang et al. MEDICAL ONCOLOGY
- MYC-Driven Tumorigenesis Is Inhibited by WRN Syndrome Gene Deficiency
- (2012) R. Moser et al. MOLECULAR CANCER RESEARCH
- Mutations and polymorphisms in TP53 gene--an overview on the role in colorectal cancer
- (2012) A. Naccarati et al. MUTAGENESIS
- High Accordance in Prognosis Prediction of Colorectal Cancer across Independent Datasets by Multi-Gene Module Expression Profiles
- (2012) Wenting Li et al. PLoS One
- A Comprehensive Characterization of Genome-Wide Copy Number Aberrations in Colorectal Cancer Reveals Novel Oncogenes and Patterns of Alterations
- (2012) Tao Xie et al. PLoS One
- Functional genomics identifies therapeutic targets for MYC-driven cancer
- (2012) M. Toyoshima et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Oncogenes in Cell Survival and Cell Death
- (2012) J. Shortt et al. Cold Spring Harbor Perspectives in Biology
- The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
- (2012) Konrad Huppi et al. Frontiers in Genetics
- Molecular Genetics of Colorectal Cancer
- (2011) Eric R. Fearon Annual Review of Pathology-Mechanisms of Disease
- Epidermal growth factor receptor (EGFR) gene promoter methylation and cetuximab treatment in colorectal cancer patients
- (2011) M Scartozzi et al. BRITISH JOURNAL OF CANCER
- Pyrosequencing-based methods reveal marked inter-individual differences in oncogene mutation burden in human colorectal tumours
- (2011) S Weidlich et al. BRITISH JOURNAL OF CANCER
- Tribbles in disease: Signaling pathways important for cellular function and neoplastic transformation
- (2011) Takashi Yokoyama et al. CANCER SCIENCE
- Programmed cell death 6 (PDCD6) inhibits angiogenesis through PI3K/mTOR/p70S6K pathway by interacting of VEGFR-2
- (2011) Seung Bae Rho et al. CELLULAR SIGNALLING
- PDCD6 additively cooperates with anti-cancer drugs through activation of NF-κB pathways
- (2011) Sung Ho Park et al. CELLULAR SIGNALLING
- An Update on the Current and Emerging Targeted Agents in Metastatic Colorectal Cancer
- (2011) Edward Chu Clinical Colorectal Cancer
- p53-dependent Induction ofPVT1and miR-1204
- (2011) Anthony M. Barsotti et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Strong negative feedback from Erk to Raf confers robustness to MAPK signalling
- (2011) R. Fritsche-Guenther et al. Molecular Systems Biology
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- Loss of Cytoplasmic CDK1 Predicts Poor Survival in Human Lung Cancer and Confers Chemotherapeutic Resistance
- (2011) Chunyu Zhang et al. PLoS One
- EphB6 Receptor Modulates Micro RNA Profile of Breast Carcinoma Cells
- (2011) Lokesh Bhushan et al. PLoS One
- PI3K-targeted therapy can be evaded by gene amplification along the MYC-eukaryotic translation initiation factor 4E (eIF4E) axis
- (2011) N. Ilic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Subtype and pathway specific responses to anticancer compounds in breast cancer
- (2011) L. M. Heiser et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease
- (2010) Wilfrido Mojica et al. BMC GENOMICS
- 5-Fluorouracil response in a large panel of colorectal cancer cell lines is associated with mismatch repair deficiency
- (2010) K Bracht et al. BRITISH JOURNAL OF CANCER
- Genetic analysis of Ras signalling pathways in cell proliferation, migration and survival
- (2010) Matthias Drosten et al. EMBO JOURNAL
- A Gene Expression Signature for Chemoradiosensitivity of Colorectal Cancer Cells
- (2010) Melanie Spitzner et al. INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS
- Integrative molecular profiling of triple negative breast cancers identifies amplicon drivers and potential therapeutic targets
- (2010) N Turner et al. ONCOGENE
- Therapeutic potential of a synthetic lethal interaction between the MYC proto-oncogene and inhibition of aurora-B kinase
- (2010) D. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tumor response to radiotherapy is dependent on genotype-associated mechanisms in vitro and in vivo
- (2010) Jerry R Williams et al. Radiation Oncology
- Comparative proteomic analysis of colon cancer cells in response to Oxaliplatin treatment
- (2009) Yi Yao et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
- (2009) Enrico Glaab et al. BMC BIOINFORMATICS
- A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines
- (2009) Alan Mackay et al. BREAST CANCER RESEARCH AND TREATMENT
- Systems Biology Reveals New Strategies for Personalizing Cancer Medicine and Confirms the Role of PTEN in Resistance to Trastuzumab
- (2009) D. Faratian et al. CANCER RESEARCH
- ERK and cell death: Mechanisms of ERK-induced cell death - apoptosis, autophagy and senescence
- (2009) Sebastien Cagnol et al. FEBS Journal
- Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer
- (2009) Jordi Camps et al. GENES CHROMOSOMES & CANCER
- EGFR fluorescence in situ hybridisation assay: guidelines for application to non-small-cell lung cancer
- (2009) M Varella-Garcia et al. JOURNAL OF CLINICAL PATHOLOGY
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2
- (2009) Hana Kim et al. NUCLEIC ACIDS RESEARCH
- NVP-BEZ235, a Dual PI3K/mTOR Inhibitor, Prevents PI3K Signaling and Inhibits the Growth of Cancer Cells with Activating PI3K Mutations
- (2008) V. Serra et al. CANCER RESEARCH
- Database for mRNA Half-Life of 19 977 Genes Obtained by DNA Microarray Analysis of Pluripotent and Differentiating Mouse Embryonic Stem Cells
- (2008) L. V. Sharova et al. DNA RESEARCH
- Multiple Loci With Different Cancer Specificities Within the 8q24 Gene Desert
- (2008) Maya Ghoussaini et al. JNCI-Journal of the National Cancer Institute
- Reverse-phase protein lysate microarrays for cell signaling analysis
- (2008) Brett Spurrier et al. Nature Protocols
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now