Influence of Feature Encoding and Choice of Classifier on Disease Risk Prediction in Genome-Wide Association Studies

Physiology Helps GWAS Take a Step Closer to Mechanism

(2014) Timothy M. Frayling et al.   DIABETES

Exploiting SNP Correlations within Random Forest for Genome-Wide Association Studies

(2014) Vincent Botta et al.   PLoS One

eXclusion: Toward Integrating the X Chromosome in Genome-wide Association Analyses

(2013) Anastasia L. Wise et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Mechanistic Phenotypes: An Aggregative Phenotyping Strategy to Identify Disease Mechanisms Using GWAS Data

(2013) Jonathan D. Mosley et al.   PLoS One

Five Years of GWAS Discovery

(2012) Peter M. Visscher et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Integrating GWAS and Expression Data for Functional Characterization of Disease-Associated SNPs: An Application to Follicular Lymphoma

(2012) Lucia Conde et al.   AMERICAN JOURNAL OF HUMAN GENETICS

CYP2C8*3 predicts benefit/risk profile in breast cancer patients receiving neoadjuvant paclitaxel

(2012) Daniel L. Hertz et al.   BREAST CANCER RESEARCH AND TREATMENT

Genetic Predisposition to Dyslipidemia and Type 2 Diabetes Risk in Two Prospective Cohorts

(2012) Q. Qi et al.   DIABETES

Use of support vector machines for disease risk prediction in genome-wide association studies: Concerns and opportunities

(2012) Florian Mittag et al.   HUMAN MUTATION

Genetic variants associated with predisposition to prostate cancer and potential clinical implications

(2012) C. L. Goh et al.   JOURNAL OF INTERNAL MEDICINE

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans

(2011) Erdal Cosgun et al.   BIOINFORMATICS

Pattern of neural responses to verbal fluency shows diagnostic specificity for schizophrenia and bipolar disorder

(2011) Sergi G Costafreda et al.   BMC Psychiatry

Association Tests for X-Chromosomal Markers – A Comparison of Different Test Statistics

(2011) Christina Loley et al.   HUMAN HEREDITY

Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies

(2011)   LANCET

Data mining approaches for genome-wide association of mood disorders

(2011) Mehdi Pirooznia et al.   PSYCHIATRIC GENETICS

A practical tutorial on the use of nonparametric statistical tests as a methodology for comparing evolutionary and swarm intelligence algorithms

(2011) Joaquín Derrac et al.   Swarm and Evolutionary Computation

BOOST: A Fast Approach to Detecting Gene-Gene Interactions in Genome-wide Case-Control Studies

(2010) Xiang Wan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application

(2010) Rita M. Cantor et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic Variation in IL28B Is Associated With Chronic Hepatitis C and Treatment Failure: A Genome-Wide Association Study

(2010) Andri Rauch et al.   GASTROENTEROLOGY

A Bird's-Eye View of MeCP2 Binding

(2010) Sonia Cohen et al.   MOLECULAR CELL

Genomewide Association Studies and Assessment of the Risk of Disease

(2010) Teri A. Manolio   NEW ENGLAND JOURNAL OF MEDICINE

Genome-wide association study (GWAS)-identified disease risk alleles do not compromise human longevity

(2010) M. Beekman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions

(2009) David J. Miller et al.   BIOINFORMATICS

Genetic Risk Profiling and Prediction of Disease Course in Crohn's Disease Patients

(2009) Liesbet Henckaerts et al.   Clinical Gastroenterology and Hepatology

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Genome-wide association study reveals genetic risk underlying Parkinson's disease

(2009) Javier Simón-Sánchez et al.   NATURE GENETICS

Genome-Wide Association Data Reveal a Global Map of Genetic Interactions among Protein Complexes

(2009) Gregory Hannum et al.   PLoS Genetics

From Disease Association to Risk Assessment: An Optimistic View from Genome-Wide Association Studies on Type 1 Diabetes

(2009) Zhi Wei et al.   PLoS Genetics

Comparative Performance Analysis of State-of-the-Art Classification Algorithms Applied to Lung Tissue Categorization

(2008) Adrien Depeursinge et al.   JOURNAL OF DIGITAL IMAGING

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS

Genotype Score in Addition to Common Risk Factors for Prediction of Type 2 Diabetes

(2008) James B. Meigs et al.   NEW ENGLAND JOURNAL OF MEDICINE