Optimal Ligand Descriptor for Pocket Recognition Based on the Beta-Shape

BetaVoid: Molecular voids via beta-complexes and Voronoi diagrams

(2014) Jae-Kwan Kim et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

GalaxyDock2: Protein-ligand docking using beta-complex and global optimization

(2013) Woong-Hee Shin et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

BetaMol: A Molecular Modeling, Analysis and Visualization Software Based on the Beta-Complex and the Quasi-Triangulation

(2012) Youngsong CHO et al.   Journal of Advanced Mechanical Design Systems and Manufacturing

BetaDock: Shape-Priority Docking Method Based on Beta-Complex

(2012) Deok-Soo Kim et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets

(2012) Deok-Soo Kim et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Identification of protein binding surfaces using surface triplet propensities

(2010) Wissam Mehio et al.   BIOINFORMATICS

Quasi-worlds and quasi-operators on quasi-triangulations

(2010) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation

(2010) Deok-Soo Kim et al.   COMPUTER-AIDED DESIGN

Protein Pockets: Inventory, Shape, and Comparison

(2010) Ryan G. Coleman et al.   Journal of Chemical Information and Modeling

Development of accurate binding affinity predictions of novel renin inhibitors through molecular docking studies

(2010) Aggeliki Politi et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

POVME: An algorithm for measuring binding-pocket volumes

(2010) Jacob D. Durrant et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Variation of protein binding cavity volume and ligand volume in protein–ligand complexes

(2009) N. Saranya et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Pharmacophore and QSAR modeling of estrogen receptor β ligands and subsequent validation and in silico search for new hits

(2009) Mutasem O. Taha et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Multiple Independent Binding Sites for Small-Molecule Inhibitors on the Oncoprotein c-Myc

(2009) Dalia I. Hammoudeh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction

(2008) William S Bush et al.   BMC BIOINFORMATICS

Data Deposition and Annotation at the Worldwide Protein Data Bank

(2008) Shuchismita Dutta et al.   MOLECULAR BIOTECHNOLOGY

MODBASE, a database of annotated comparative protein structure models and associated resources

(2008) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

Pocket extraction on proteins via the Voronoi diagram of spheres

(2007) Donguk Kim et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING