4.4 Article

Impact of Slip Cycles on the Operation Modes and Efficiency of Molecular Motors

Journal

JOURNAL OF STATISTICAL PHYSICS
Volume 141, Issue 1, Pages 1-16

Publisher

SPRINGER
DOI: 10.1007/s10955-010-0050-5

Keywords

Chemomechanical coupling; Operation modes; Motor efficiency

Ask authors/readers for more resources

Kinesin is a motor molecule that moves processively on microtubule tracks and is involved in active intracellular transport processes. For small loads, it is powered by the hydrolysis of one ATP molecule per step. Here we extent our previously introduced network theory in order to study the possibility of two different mechanical stepping transitions and the general behavior of the motor's efficiency. Our theory shows explicitly how chemical and mechanical slip cycles emerge that weaken the coupling between ATP hydrolysis and mechanical stepping. Near chemomechanical equilibrium, the motor efficiency eta may vary between eta=1 for tight coupling and eta=0 for loose coupling, depending on the relevance of the slip cycles. Far from chemomechanical equilibrium, on the other hand, the motor efficiency is found to decay as 1/Delta mu with increasing Delta mu irrespective of the presence of slip cycles, where Delta mu represents the reaction free enthalpy or chemical potential difference per ATP hydrolysis.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Cell Biology

Membrane fluctuations and acidosis regulate cooperative binding of 'marker of self' protein CD47 with the macrophage checkpoint receptor SIRPα

Jan Steinkuehler, Bartosz Rozycki, Cory Alvey, Reinhard Lipowsky, Thomas R. Weikl, Rumiana Dimova, Dennis E. Discher

JOURNAL OF CELL SCIENCE (2019)

Article Chemistry, Multidisciplinary

Collective Force Generation by Molecular Motors Is Determined by Strain-Induced Unbinding

Mehmet Can Ucar, Reinhard Lipowsky

NANO LETTERS (2020)

Article Multidisciplinary Sciences

Controlled division of cell-sized vesicles by low densities of membrane-bound proteins

Jan Steinkuehler, Roland L. Knorr, Ziliang Zhao, Tripta Bhatia, Solveig M. Bartelt, Seraphine Wegner, Rumiana Dimova, Reinhard Lipowsky

NATURE COMMUNICATIONS (2020)

Article Chemistry, Physical

Coarse-Grained Molecular Model for the Glycosylphosphatidylinositol Anchor with and without Protein

Pallavi Banerjee, Reinhard Lipowsky, Mark Santer

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2020)

Article Chemistry, Multidisciplinary

Mechanical Tension of Biomembranes Can Be Measured by Super Resolution (STED) Microscopy of Force-Induced Nanotubes

Debjit Roy, Jan Steinkuehler, Ziliang Zhao, Reinhard Lipowsky, Rumiana Dimova

NANO LETTERS (2020)

Correction Multidisciplinary Sciences

Optimizing the dynamics of protein expression (vol 9, 7511, 2019)

Jan-Hendrik Trosemeier, Sophia Rudorf, Holger Loessner, Benjamin Hofner, Andreas Reuter, Thomas Schulenborg, Ina Koch, Isabelle Bekeredjian-Ding, Reinhard Lipowsky, Christel Kamp

SCIENTIFIC REPORTS (2020)

Article Nanoscience & Nanotechnology

Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry

Ohad Vonshak, Yiftach Divon, Stefanie Foerste, David Garenne, Vincent Noireaux, Reinhard Lipowsky, Sophia Rudorf, Shirley S. Daube, Roy H. Bar-Ziv

NATURE NANOTECHNOLOGY (2020)

Article Chemistry, Multidisciplinary

Budding and Fission of Nanovesicles Induced by Membrane Adsorption of Small Solutes

Rikhia Ghosh, Vahid Satarifard, Andrea Grafmueller, Reinhard Lipowsky

Summary: In this study, budding and fission processes of lipid nanovesicles with a size below 50 nm were reported using coarse-grained molecular dynamics simulations. The processes are influenced by solute concentration and solvent conditions, with budding being reversible and unexpected morphological transformations observed under poor solvent conditions. This reveals a nanoscale mechanism for the budding and fission of nanovesicles, arising from the interplay between membrane elasticity and solute-mediated membrane adhesion.

ACS NANO (2021)

Article Multidisciplinary Sciences

En route to dynamic life processes by SNARE-mediated fusion of polymer and hybrid membranes

Lado Otrin, Agata Witkowska, Nika Marusic, Ziliang Zhao, Rafael B. Lira, Fotis L. Kyrilis, Farzad Hamdi, Ivan Ivanov, Reinhard Lipowsky, Panagiotis L. Kastritis, Rumiana Dimova, Kai Sundmacher, Reinhard Jahn, Tanja Vidakovic-Koch

Summary: Replacing lipids with polymers can partially address the durability issue in artificial cells, and the study on SNARE-mediated fusion in synthetic amphiphile membranes has identified bending rigidity and pore edge tension as key parameters for fusion.

NATURE COMMUNICATIONS (2021)

Review Biochemistry & Molecular Biology

Leaflet Tensions Control the Spatio-Temporal Remodeling of Lipid Bilayers and Nanovesicles

Reinhard Lipowsky, Rikhia Ghosh, Vahid Satarifard, Aparna Sreekumari, Miftakh Zamaletdinov, Bartosz Rozycki, Markus Miettinen, Andrea Grafmueller

Summary: Biological and biomimetic membranes based on lipid bilayers play a crucial role in drug delivery. Recent molecular dynamics simulations have provided insights into the spatio-temporal remodeling of individual bilayers and nanovesicles. The concept of leaflet tensions, which control stability, lipid flip-flops, shape transformations, and adhesion/fusion of nanovesicles, has been highlighted in these studies.

BIOMOLECULES (2023)

Review Biochemistry & Molecular Biology

Remodeling of Biomembranes and Vesicles by Adhesion of Condensate Droplets

Reinhard Lipowsky

Summary: Condensate droplets form in solutions where macromolecules undergo phase separation. This phenomenon has been observed both in biochemical analysis and in living cells. The review focuses on the interactions between condensate droplets and biomimetic and biological membranes.

MEMBRANES (2023)

Article Chemistry, Physical

Active shape oscillations of giant vesicles with cyclic closure and opening of membrane necks

Simon Christ, Thomas Litschel, Petra Schwille, Reinhard Lipowsky

Summary: The study investigates shape oscillations of giant unilamellar vesicles (GUVs) caused by the Min protein system, where MinD and MinE proteins periodically attach to and detach from the membrane, driven by ATP hydrolysis. The oscillations can be understood in terms of spontaneous curvature changing periodically, with the vesicle shape transforming from symmetric to asymmetric and back during each cycle. The radius of the narrow membrane neck connecting the subcompartments undergoes periodic oscillations with an average time period of 56 seconds.

SOFT MATTER (2021)

Article Chemistry, Physical

Unfolding mechanism and free energy landscape of single, stable, alpha helices at low pull speeds

Ana Elisa Bergues-Pupo, Reinhard Lipowsky, Ana Vila Verde

SOFT MATTER (2020)

Article Chemistry, Physical

Simple sugars shape giant vesicles into multispheres with many membrane necks

Tripta Bhatia, Simon Christ, Jan Steinkuehler, Rumiana Dimova, Reinhard Lipowsky

SOFT MATTER (2020)

Article Materials Science, Biomaterials

Directed Growth of Biomimetic Microcompartments

Ivan Ivanov, Rafael B. Lira, T-Y Dora Tang, Titus Franzmann, Adam Klosin, Lucas Caire da Silva, Anthony Hyman, Katharina Landfester, Reinhard Lipowsky, Kai Sundmacher, Rumiana Dimova

ADVANCED BIOSYSTEMS (2019)

No Data Available